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[180698_s_at]

Description R12E2.9 /REP_DB=WormBase Gene ID /WP=CE18141 /TR=O61786 /GB=AAC17030.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 20      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 33      6grp_total > 34      4grp_total > 56      6grp_highest_sub > 02      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1250
1 2 3 4 range
A 2323.7
(-1.3)
P 		2750.3
(1.4)
P 		3012.4
(3)
P 		2058.2
(-3)
P 		954
B 2486.5
(-1.2)
P 		2536.2
(-0.9)
P 		3308
(3)
P 		2127.9
(-3)
P 		1180
C 2190.8
(-2.3)
P 		2524.2
(0.5)
P 		2827.3
(3)
P 		2103.3
(-3)
P 		724
avr 2333.7
(-1.5) 		2603.6
(0.2) 		3049.2
(3) 		2096.5
(-3) 		953

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1403
1 2 3 4 5 6 range
A 2160.9
(2.4)
P 		2291.7
(3)
P 		2271.8
(2.9)
P 		1548.4
(-0.7)
P 		1072.1
(-3)
P 		1512.9
(-0.8)
P 		1220
B 1891.7
(0.4)
P 		2350.1
(2.8)
P 		2396.8
(3)
P 		1766.2
(-0.2)
P 		1214.1
(-3)
P 		1344.4
(-2.3)
P 		1183
C 1603.8
(-0.3)
P 		2326.2
(3)
P 		1995
(1.5)
P 		1985.8
(1.5)
P 		993.6
(-3)
P 		1244.5
(-1.9)
P 		1333
avr 1885.5
(0.9) 		2322.7
(3) 		2221.2
(2.5) 		1766.8
(0.3) 		1093.3
(-3) 		1367.3
(-1.7) 		1229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 684
1 2 3 4 range
A 846.1
(3)
P 		597
(0.3)
P 		787.5
(2.4)
P 		301.3
(-3)
P 		545
B 792.9
(3)
P 		626.4
(0.1)
P 		766.5
(2.5)
P 		453.4
(-3)
P 		340
C 725.2
(0.5)
P 		725.7
(0.5)
P 		985.4
(3)
P 		354.7
(-3)
P 		631
avr 788.1
(2.3) 		649.7
(0.5) 		846.5
(3) 		369.8
(-3) 		477

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 494
1 2 3 4 5 6 range
A 398.4
(-2.1)
P 		815
(3)
P 		494.8
(-0.9)
P 		392.7
(-2.2)
P 		323.5
(-3)
P 		368.3
(-2.5)
P 		492
B 658.2
(0.6)
P 		782.3
(3)
P 		582
(-0.8)
P 		467.8
(-3)
P 		493.3
(-2.5)
P 		501.3
(-2.4)
P 		315
C 594.5
(1.2)
P 		709.8
(3)
P 		507.8
(-0.1)
P 		399.3
(-1.8)
P 		321.5
(-3)
P 		416.6
(-1.5)
P 		388
avr 550.4
(-0.4) 		769
(3) 		528.2
(-0.7) 		419.9
(-2.4) 		379.4
(-3) 		428.7
(-2.2) 		390
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180698_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.731
Sequence Type Exemplar sequence
Representative Public ID R12E2.9 NCBI
Target Description R12E2.9 /REP_DB=WormBase Gene ID /WP=CE18141 /TR=O61786 /GB=AAC17030.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058912(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058912 NCBI Caenorhabditis elegans INneXin family member (inx-15) (inx-15) mRNA, complete cds. 11/11 None
SNAP00000012678 ENSEMBL cdna:SNAP chromosome:CEL140:I:4155595:4161111:-1 11/11 None
GENEFINDER00000012697 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4159098:4161111:-1 11/11 None
R12E2.9 ENSEMBL cdna:known chromosome:CEL140:I:4159017:4161114:-1 gene:R12E2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4159097-4161111(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol inx-15
Ensembl R12E2.9
Entrez Gene 172004 Entrez gene
SwissProt O61786 EMBL-EBI
WormBase CE18141 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491313 INneXin family member (inx-15) [Caenorhabditis elegans] gb|AAC17030.1| Innexin protein 15 [Caenorhabditis elegans] 0.0
blast CAE66708 Hypothetical protein CBG12053 [Caenorhabditis briggsae] 1.0E-173
blast CAE66708 Hypothetical protein CBG12053 [Caenorhabditis briggsae] 1.0E-166
blast NP_491312 R12E2.8 [Caenorhabditis elegans] gb|AAC17029.3| Hypothetical protein R12E2.8 [Caenorhabditis elegans] 4.0E-83
blast AAN71843 Innexin protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024407.1| INneXin family member (inx-1) [Caenorhabditis elegans] 6.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 6.8E-79
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491313.1 4 24-46,101-123,189-211,270-292
R12E2.9 4 24-46,101-123,189-211,270-292
SNAP00000012678 4 24-46,101-123,189-211,270-292
GENEFINDER00000012697 4 24-46,101-123,189-211,270-292
Sequence
Target Sequence 
>C. ELEGANS:180698_S_AT
gggtttctttcaattatatcctcacaaaattcctgtttctggtaaatcttattgcacaaa
tgttcctgattcatttcttcctcgggttcgatttggatgactttataagtctccgtgttg
gattcggaagcaactggatcgctaacggaatcttcccaagacaaacaatgtgtgattttg
agattcgcaagaagggaagtatccaaaagtacagtgtccaatgtgttctttcaatgaata
tgctaaatgagaaagtattccttgcactcttctactggatcattgcattgttcttcctta
ccgtctggaatctcttcacgtctttccaacatttcttccatgcttcgtctagaaaagaat
ttgtaagacgaatgctcagcgcaggtggtcatactttaactgacggtggacatggagaag
aaaaagttccccttgtggaacgacctgatggcacttactcgaacgactacaatcgagttc
tttccatcaatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTTTCTTTCAATTATATCCTCAC 558 495 563 Antisense
AATGTTCCTGATTCATTTCTTCCTC 153 165 621 Antisense
TTTCTTCCTCGGGTTCGATTTGGAT 34 673 636 Antisense
CTGGATCGCTAACGGAATCTTCCCA 338 241 696 Antisense
CAGTGTCCAATGTGTTCTTTCAATG 122 209 774 Antisense
CTTGCACTCTTCTACTGGATCATTG 227 219 823 Antisense
GGATCATTGCATTGTTCTTCCTTAC 35 513 839 Antisense
CTTACCGTCTGGAATCTCTTCACGT 553 221 859 Antisense
GAATGCTCAGCGCAGGTGGTCATAC 77 331 932 Antisense
GGAACGACCTGATGGCACTTACTCG 356 525 999 Antisense
ACAATCGAGTTCTTTCCATCAATCC 618 113 1031 Antisense
Sequence Source Affymetrix Proprietary Database