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[180697_at]

Description M03F4.4 /REP_DB=WormBase Gene ID /WP=CE12362 /TR=Q23014 /GB=AAB04574.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 53      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 97.5
(3)
A 		51.5
(-0.4)
A 		35.5
(-1.6)
A 		16.4
(-3)
A 		81
B 93.3
(3)
A 		83.6
(2.3)
A 		70
(1.4)
A 		5.6
(-3)
A 		88
C 60.3
(-1.4)
A 		102.1
(3)
A 		45.7
(-3)
A 		50.3
(-2.5)
A 		56
avr 83.7
(3) 		79.1
(2.5) 		50.4
(-0.4) 		24.1
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 105.6
(3)
A 		12.8
(-2.7)
A 		7.4
(-3)
A 		71.1
(0.9)
A 		40.2
(-1)
A 		26.1
(-1.9)
A 		98
B 64.1
(2.7)
A 		65.5
(3)
A 		35.2
(-2.5)
A 		36
(-2.3)
A 		32.3
(-3)
A 		57.1
(1.5)
A 		33
C 43.2
(-2.5)
A 		58.3
(0.2)
A 		74.2
(3)
A 		63
(1)
A 		73.6
(2.9)
A 		40.1
(-3)
A 		34
avr 71
(3) 		45.5
(-1.8) 		38.9
(-3) 		56.7
(0.3) 		48.7
(-1.2) 		41.1
(-2.6) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 35.5
(3)
A 		11.2
(-1.4)
A 		9.3
(-1.7)
A 		2.4
(-3)
A 		33
B 29.8
(3)
A 		20.6
(1.1)
A 		16.2
(0.1)
A 		1.2
(-3)
A 		29
C 19.9
(0.3)
A 		29.3
(3)
A 		15.9
(-0.9)
A 		8.5
(-3)
A 		21
avr 28.4
(3) 		20.4
(1) 		13.8
(-0.6) 		4
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 19.5
(3)
A 		4.5
(-2)
A 		1.6
(-3)
A 		18
(2.5)
A 		12.1
(0.5)
A 		6.4
(-1.4)
A 		18
B 22.3
(3)
A 		21.8
(2.8)
A 		8.6
(-3)
A 		9.5
(-2.6)
A 		13.1
(-1)
A 		21.3
(2.6)
A 		14
C 16
(-1.2)
A 		17.8
(-0.2)
A 		18.9
(0.4)
A 		12.7
(-3)
A 		23.8
(3)
A 		13.4
(-2.6)
A 		11
avr 19.3
(3) 		14.7
(0.1) 		9.7
(-3) 		13.4
(-0.7) 		16.3
(1.1) 		13.7
(-0.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180697_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16095
Sequence Type Exemplar sequence
Representative Public ID M03F4.4 NCBI
Target Description M03F4.4 /REP_DB=WormBase Gene ID /WP=CE12362 /TR=Q23014 /GB=AAB04574.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076439(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076439 NCBI Caenorhabditis elegans M03F4.4 (M03F4.4) mRNA, complete cds. 11/11 None
M03F4.4 ENSEMBL cdna:known chromosome:CEL140:X:4957296:4958034:-1 gene:M03F4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4957296-4958035(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03F4.4
Entrez Gene 187428 Entrez gene
SwissProt Q23014 EMBL-EBI
WormBase CE12362 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04574 Hypothetical protein M03F4.4 [Caenorhabditis elegans] ref|NP_508840.1| M03F4.4 [Caenorhabditis elegans] 1.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508840.1 1 111-133
M03F4.4 1 111-133
Sequence
Target Sequence 
>C. ELEGANS:180697_AT
ggctgccgattttcgacgtgattgtacctgttcctagttttttgatcaggaaaagcagga
agagatatatttctggcatcgagaaacacaagaagaagagggtgaccaaacggaaggggt
cagattccccggttgacttgattcccaaacgtttctcatttacccccgctcgtcgcattt
caactctagagatggagattgtgtcggccaagggtgttagccataccttatttaagaaat
gtagcgattatgaaaggttgcttgcacccggggagtttccaagaaatcgtctccgatcag
cagcacggcatctctcaatctcctcacaacttgcaatctttttgctatttgccaatgtgt
gtaatgctcttgtcgccgccgtcctcctgccactccgaatgtttcgtctccacaagatcg
cctcctgctcctcttttaacactcttcctcattacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGCCGATTTTCGACGTGATTGT 510 539 17 Antisense
ACGTGATTGTACCTGTTCCTAGTTT 274 95 32 Antisense
TCAGATTCCCCGGTTGACTTGATTC 249 623 136 Antisense
GACTTGATTCCCAAACGTTTCTCAT 111 371 151 Antisense
CGCTCGTCGCATTTCAACTCTAGAG 685 255 183 Antisense
GATTGTGTCGGCCAAGGGTGTTAGC 56 435 213 Antisense
AGAAATCGTCTCCGATCAGCAGCAC 61 73 298 Antisense
CAATCTCCTCACAACTTGCAATCTT 414 181 332 Antisense
AATGTGTGTAATGCTCTTGTCGCCG 667 163 370 Antisense
CGAATGTTTCGTCTCCACAAGATCG 599 253 412 Antisense
TTTTAACACTCTTCCTCATTACATT 648 675 450 Antisense
Sequence Source Affymetrix Proprietary Database