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[180695_at]

Description W06D11.1 /REP_DB=WormBase Gene ID /WP=CE06552 /TR=Q17623 /GB=CAA93539.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 61      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 46.2
(0.2)
A 		42.3
(-0.3)
A 		67.2
(3)
A 		21.4
(-3)
A 		46
B 85.6
(3)
A 		75.2
(2.2)
A 		58.1
(0.8)
A 		9
(-3)
A 		77
C 56.3
(3)
A 		43.2
(-3)
A 		48.7
(-0.5)
A 		50.6
(0.4)
A 		13
avr 62.7
(3) 		53.6
(1.5) 		58
(2.2) 		27
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 105
(-0.7)
A 		81.2
(-1.9)
A 		57.4
(-3)
A 		72.3
(-2.3)
A 		110.3
(-0.5)
A 		183.3
(3)
A 		126
B 134.2
(1)
A 		92
(-1)
A 		51.6
(-3)
A 		74.7
(-1.9)
A 		118
(0.2)
A 		174.3
(3)
M 		123
C 111.6
(0.4)
A 		86.4
(-0.5)
A 		20.3
(-3)
A 		66.8
(-1.3)
A 		131.2
(1.1)
A 		181.5
(3)
P 		161
avr 116.9
(0.2) 		86.5
(-1.1) 		43.1
(-3) 		71.3
(-1.8) 		119.8
(0.4) 		179.7
(3) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 16.8
(2.7)
A 		9.2
(-0.5)
A 		17.6
(3)
A 		3.1
(-3)
A 		15
B 27.3
(3)
A 		18.6
(0.9)
A 		13.5
(-0.3)
A 		1.9
(-3)
A 		25
C 18.6
(3)
A 		12.4
(-0.7)
A 		17
(2)
A 		8.5
(-3)
A 		10
avr 20.9
(3) 		13.4
(0.3) 		16
(1.2) 		4.5
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 19.4
(-1.7)
A 		28.9
(0.1)
A 		12.5
(-3)
A 		18.3
(-1.9)
A 		33.3
(0.9)
A 		44.6
(3)
A 		32
B 46.7
(0.9)
A 		30.6
(-0.9)
A 		12.5
(-3)
A 		19.8
(-2.2)
A 		47.9
(1)
A 		65
(3)
M 		53
C 41.4
(0.9)
A 		26.4
(-0.7)
A 		5.2
(-3)
A 		13.4
(-2.1)
A 		42.4
(1)
A 		60.7
(3)
P 		56
avr 35.8
(0.3) 		28.6
(-0.6) 		10.1
(-3) 		17.2
(-2.1) 		41.2
(1) 		56.8
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180695_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16432
Sequence Type Exemplar sequence
Representative Public ID W06D11.1 NCBI
Target Description W06D11.1 /REP_DB=WormBase Gene ID /WP=CE06552 /TR=Q17623 /GB=CAA93539.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077651(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077651 NCBI Caenorhabditis elegans W06D11.1 (W06D11.1) mRNA, complete cds. 11/11 None
SNAP00000035021 ENSEMBL cdna:SNAP chromosome:CEL140:X:12294486:12295232:1 11/11 None
GENEFINDER00000035028 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12294486:12295232:1 11/11 None
W06D11.1 ENSEMBL cdna:known chromosome:CEL140:X:12293688:12295232:1 gene:W06D11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12293687-12295232(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06D11.1
Entrez Gene 189242 Entrez gene
SwissProt Q17623 EMBL-EBI
WormBase CE06552 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93539 Hypothetical protein W06D11.1 [Caenorhabditis elegans] emb|CAA93530.1| Hypothetical protein W06D11.1 [Caenorhabditis elegans] ref|NP_510052.1| W06D11.1 [Caenorhabditis elegans] 1.0E-127
blast CAA93539 Hypothetical protein W06D11.1 [Caenorhabditis elegans] emb|CAA93530.1| Hypothetical protein W06D11.1 [Caenorhabditis elegans] ref|NP_510052.1| W06D11.1 [Caenorhabditis elegans] 1.0E-108
Sequence
Target Sequence 
>C. ELEGANS:180695_AT
ggtggccacaagccaacgtttgcacaaggaattggagccagataagtcgtaccccctccc
accgttgagccatatcacaactcagccagaatggacaactggacaaaatgttgttgccac
aatttacgtgcacaacattggtgtgaatggtagagtaggaagactcttctcaccggtcga
tattagcatttacctattcaaagctactttggctgaattcatccatgtactcaagggatt
ctattctgatgattatccagcggtgttcattggaaaagaaggcagcatctactatccatg
tgactcattcattccacatctaaataactgccatttgatgcatttgacagccgagaaaca
gcacatttttgctagggtgtatcagaatgatgacgcaggctgtaacaaggcccgagaggc
tttgtaccaatatctcgaccttattcaaccatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGCCACAAGCCAACGTTTGCAC 270 499 141 Antisense
TTGGAGCCAGATAAGTCGTACCCCC 234 709 172 Antisense
TCCCACCGTTGAGCCATATCACAAC 701 597 197 Antisense
GTTGTTGCCACAATTTACGTGCACA 427 437 250 Antisense
ACTCTTCTCACCGGTCGATATTAGC 183 101 303 Antisense
GGCTGAATTCATCCATGTACTCAAG 556 537 351 Antisense
GCAGCATCTACTATCCATGTGACTC 677 311 422 Antisense
TGACTCATTCATTCCACATCTAAAT 351 571 441 Antisense
GACGCAGGCTGTAACAAGGCCCGAG 34 381 532 Antisense
GGCCCGAGAGGCTTTGTACCAATAT 140 543 549 Antisense
ATATCTCGACCTTATTCAACCATGG 354 19 570 Antisense
Sequence Source Affymetrix Proprietary Database