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[180694_at] G-protein coupled receptor, srg family

Description W09D12.2 /REP_DB=WormBase Gene ID /WP=CE14762 /TR=Q23228 /GB=CAB01668.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 21      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 60.4
(1.9)
P 		53.5
(1.3)
A 		5.2
(-3)
A 		73.1
(3)
P 		68
B 51.8
(3)
A 		29.5
(-0.6)
A 		47.6
(2.3)
A 		15.1
(-3)
A 		37
C 14.4
(-3)
A 		30.9
(-1.7)
A 		22.7
(-2.3)
A 		89.7
(3)
A 		75
avr 42.2
(-0) 		38
(-0.7) 		25.2
(-3) 		59.3
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 33.5
(1)
A 		6.5
(-3)
A 		46.8
(3)
P 		28.7
(0.3)
A 		12.8
(-2.1)
A 		25.5
(-0.2)
A 		40
B 60.9
(3)
P 		14.8
(-2.5)
A 		11
(-3)
A 		49.5
(1.6)
A 		38
(0.2)
A 		26.1
(-1.2)
A 		50
C 27
(-0.1)
A 		49.3
(3)
A 		11.2
(-2.4)
A 		13.4
(-2.1)
A 		16.6
(-1.6)
A 		6.7
(-3)
A 		43
avr 40.5
(3) 		23.5
(-1.8) 		23
(-2) 		30.5
(0.2) 		22.5
(-2.1) 		19.4
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 22
(3)
P 		11.6
(-0)
A 		1.4
(-3)
A 		10.7
(-0.3)
P 		21
B 16.5
(3)
A 		7.3
(-1.2)
A 		11
(0.5)
A 		3.2
(-3)
A 		13
C 4.8
(-3)
A 		8.9
(-0.6)
A 		7.9
(-1.2)
A 		15.1
(3)
A 		10
avr 14.4
(3) 		9.3
(-1) 		6.8
(-3) 		9.7
(-0.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6.2
(-0)
A 		2.3
(-3)
A 		10.2
(3)
P 		7.3
(0.8)
A 		3.9
(-1.8)
A 		6.2
(-0)
A 		8
B 21.2
(3)
P 		4.9
(-2.3)
A 		2.7
(-3)
A 		13.1
(0.4)
A 		15.4
(1.1)
A 		9.7
(-0.7)
A 		19
C 10
(0.7)
A 		15
(3)
A 		2.9
(-2.7)
A 		2.7
(-2.8)
A 		5.4
(-1.5)
A 		2.2
(-3)
A 		13
avr 12.5
(3) 		7.4
(-1.3) 		5.3
(-3) 		7.7
(-1) 		8.2
(-0.6) 		6
(-2.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180694_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12966
Sequence Type Exemplar sequence
Representative Public ID W09D12.2 NCBI
Target Description W09D12.2 /REP_DB=WormBase Gene ID /WP=CE14762 /TR=Q23228 /GB=CAB01668.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074278(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074278 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-55) (srg-55) mRNA, complete cds. 10/11 None
GENEFINDER00000007081 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14929299:14936685:-1 10/11 None
W09D12.2 ENSEMBL cdna:known chromosome:CEL140:V:14929299:14930931:-1 gene:W09D12.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14929298-14933006(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srg family
Gene Symbol srg-55
Ensembl W09D12.2
Entrez Gene 189319 Entrez gene
SwissProt Q23228 EMBL-EBI
WormBase CE33198 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01668 Hypothetical protein W09D12.2 [Caenorhabditis elegans] ref|NP_506679.2| Serpentine Receptor, class G (gamma) family member (srg-55) [Caenorhabditis elegans] 1.0E-146
blast CAB01668 Hypothetical protein W09D12.2 [Caenorhabditis elegans] ref|NP_506679.2| Serpentine Receptor, class G (gamma) family member (srg-55) [Caenorhabditis elegans] 1.0E-144
blast CAD60425 Hypothetical protein W09D12.3 [Caenorhabditis elegans] ref|NP_872230.1| Serpentine Receptor, class G (gamma) family member (srg-54) [Caenorhabditis elegans] 4.0E-77
blast CAD60425 Hypothetical protein W09D12.3 [Caenorhabditis elegans] ref|NP_872230.1| Serpentine Receptor, class G (gamma) family member (srg-54) [Caenorhabditis elegans] 1.0E-75
blast AAO26014 Serpentine receptor, class g (gamma) protein 60 [Caenorhabditis elegans] ref|NP_503739.2| Serpentine Receptor, class G (gamma) family member (srg-60) [Caenorhabditis elegans] 7.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506679.2 7 5-27,40-59,89-111,123-145,173-195,216-238,253-272
W09D12.2 7 5-27,40-59,89-111,123-145,173-195,216-238,253-272
GENEFINDER00000007081 7 232-254,263-285,315-337,349-371,402-424,445-467,482-501
Sequence
Target Sequence 
>C. ELEGANS:180694_AT
ggggtcgatattaccttcttgtgccaatatttggatttgtgtattcatttttagtaattt
ctccatggtggattttcggaaacttcatggcaaaagttgaccttgtagatggaaagcttc
atactacagtgaatccagttcgtgaaacatttaaatttccaaatctcaaaacacaatcaa
gtgttcagaaatccctattcatgcattccaccatcaactatctattctcattattctatt
ttctactaataattttagttggggtctggacaacaataactctacaatcacgagggaaaa
agagtggatctattaggaatcagcatttcgtacagaagttgacaaaagttattgtatgta
atagtgttttaatgtctggaaatttgttgttactggtagtattaagcgtgttttacattt
tatttccaatgcaatcggcagtttcaaaatttaaatggattgtgatcactttcacgtcag
atatggtgacccttgcaatgccttacctattacttgcatttgattcaaatatccgcagaa
ttctccgaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGTCGATATTACCTTCTTGTGCC 575 497 665 Antisense
CAGAAATCCCTATTCATGCATTCCA 388 205 850 Antisense
ATTCATGCATTCCACCATCAACTAT 673 11 861 Antisense
TATTCTCATTATTCTATTTTCTACT 202 665 887 Antisense
GGGGTCTGGACAACAATAACTCTAC 191 497 925 Antisense
GCGTGTTTTACATTTTATTTCCAAT 231 291 1070 Antisense
ATTTCCAATGCAATCGGCAGTTTCA 21 17 1086 Antisense
TGATCACTTTCACGTCAGATATGGT 158 565 1127 Antisense
AGATATGGTGACCCTTGCAATGCCT 690 63 1143 Antisense
GCCTTACCTATTACTTGCATTTGAT 303 281 1164 Antisense
AAATATCCGCAGAATTCTCCGAATT 493 115 1191 Antisense
Sequence Source Affymetrix Proprietary Database