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[180693_at]

Description F21A10.2 /REP_DB=WormBase Gene ID /WP=CE23678 /TR=Q9U3I3 /GB=CAA16508.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 30      6grp_total > 07      4grp_total > 55      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 500
1 2 3 4 range
A 1181.4
(3)
P 		684.3
(-3)
P 		691.1
(-2.9)
P 		739.2
(-2.3)
P 		497
B 1031.5
(3)
P 		769.4
(-2.1)
P 		858.5
(-0.4)
P 		722
(-3)
P 		310
C 1117
(3)
P 		883
(-0.2)
P 		879.2
(-0.3)
P 		681
(-3)
P 		436
avr 1110
(3) 		778.9
(-2) 		809.6
(-1.6) 		714.1
(-3) 		396

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1018
1 2 3 4 5 6 range
A 998.4
(2.5)
P 		1053.6
(3)
P 		515.9
(-2.3)
P 		695
(-0.5)
P 		441.4
(-3)
P 		596.3
(-1.5)
P 		612
B 968.8
(3)
P 		655.6
(-0.6)
P 		576.6
(-1.5)
P 		703.1
(-0)
P 		444.8
(-3)
P 		491.2
(-2.5)
P 		524
C 1436.3
(3)
P 		690.9
(-1.4)
P 		1000.9
(0.4)
P 		572.7
(-2.1)
P 		602.6
(-1.9)
P 		418.5
(-3)
P 		1018
avr 1134.5
(3) 		800
(-0.1) 		697.8
(-1.1) 		656.9
(-1.5) 		496.3
(-3) 		502
(-2.9) 		638
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 322
1 2 3 4 range
A 430.2
(3)
P 		148.6
(-2.2)
P 		180.7
(-1.6)
P 		108.2
(-3)
P 		322
B 328.9
(3)
P 		190
(-1.8)
P 		198.9
(-1.5)
P 		153.9
(-3)
P 		175
C 369.8
(3)
P 		253.9
(0.3)
P 		306.4
(1.5)
P 		114.8
(-3)
P 		255
avr 376.3
(3) 		197.5
(-1.3) 		228.7
(-0.5) 		125.6
(-3) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 420
1 2 3 4 5 6 range
A 184
(-1.4)
P 		374.7
(3)
P 		112.4
(-3)
P 		176.3
(-1.5)
P 		133.2
(-2.5)
P 		145.2
(-2.2)
P 		262
B 337.1
(3)
P 		218.2
(-0.6)
P 		140
(-3)
P 		186.2
(-1.6)
P 		180.7
(-1.8)
P 		183.1
(-1.7)
P 		197
C 532.4
(3)
P 		210.8
(-1.6)
P 		254.8
(-1)
P 		115.2
(-3)
P 		195
(-1.9)
P 		140.1
(-2.6)
P 		417
avr 351.2
(3) 		267.9
(0.4) 		169.1
(-2.6) 		159.2
(-2.9) 		169.6
(-2.6) 		156.1
(-3) 		195
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180693_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16079
Sequence Type Exemplar sequence
Representative Public ID F21A10.2 NCBI
Target Description F21A10.2 /REP_DB=WormBase Gene ID /WP=CE23678 /TR=Q9U3I3 /GB=CAA16508.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171762(11), NM_077308(11), NM_171761(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171762 NCBI Caenorhabditis elegans F21A10.2a (F21A10.2) mRNA, complete cds. 11/11 None
NM_077308 NCBI Caenorhabditis elegans F21A10.2c (F21A10.2) mRNA, complete cds. 11/11 None
NM_171761 NCBI Caenorhabditis elegans F21A10.2b (F21A10.2) mRNA, complete cds. 11/11 None
SNAP00000008356 ENSEMBL cdna:SNAP chromosome:CEL140:X:10181739:10185457:-1 11/11 None
GENEFINDER00000008361 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10181739:10183840:-1 11/11 None
F21A10.2a.3 ENSEMBL cdna:known chromosome:CEL140:X:10180880:10194305:-1 gene:F21A10.2 11/11 A 
F21A10.2a.2 ENSEMBL cdna:known chromosome:CEL140:X:10180880:10189130:-1 gene:F21A10.2 11/11 A 
F21A10.2a.1 ENSEMBL cdna:known chromosome:CEL140:X:10180880:10188710:-1 gene:F21A10.2 11/11 A 
F21A10.2a.4 ENSEMBL cdna:known chromosome:CEL140:X:10181739:10188400:-1 gene:F21A10.2 11/11 A 
F21A10.2b ENSEMBL cdna:known chromosome:CEL140:X:10181739:10188263:-1 gene:F21A10.2 11/11 None
F21A10.2c ENSEMBL cdna:known chromosome:CEL140:X:10181739:10194260:-1 gene:F21A10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10181738-10187725(-) 100.0 100.0
Public Domain and Genome References
Ensembl F21A10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD44121 Hypothetical protein F21A10.2b [Caenorhabditis elegans] ref|NP_741883.1| F21A10.2b [Caenorhabditis elegans] 0.0
blast CAD44135 Hypothetical protein F21A10.2c [Caenorhabditis elegans] emb|CAD44122.1| Hypothetical protein F21A10.2c [Caenorhabditis elegans] ref|NP_509709.2| F21A10.2c [Caenorhabditis elegans] 0.0
blast CAA16508 Hypothetical protein F21A10.2a [Caenorhabditis elegans] ref|NP_741884.1| F21A10.2a [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741884.1 1 624-646
NP_509709.2 1 675-697
NP_741883.1 1 673-695
F21A10.2a.3 1 624-646
F21A10.2a.2 1 624-646
F21A10.2a.1 1 624-646
F21A10.2a.4 1 624-646
F21A10.2b 1 673-695
F21A10.2c 1 675-697
SNAP00000008356 1 259-281
GENEFINDER00000008361 1 232-254
Sequence
Target Sequence 
>C. ELEGANS:180693_AT
acgtgtcgtggatattgctgcatggaatatgacaaagaccacgctgagctggaaattact
gaatatgatccaaataccgcaactgacaacgactttgggttcaaagcagatactcgttcc
gatttcacacttaaagggtttggtaacaacgtgaaaatttcactacctgaattaggaatg
caaattgatgagcgttactgcatcgaaaaaagctgtgtcaagaagaggaaggtgtacagt
ctctttattccaatgactcgatacctgccaaatgttccactggaggttcagattgatgtc
ccatcttccaaggtggtcaacaactgtggctacatccaggaatttgacaacagaaaatgc
gacgaaacaggaagctcgtccacagaaacggatgctccaagatcgatccaactgtttgat
aacacgttccaagtcagtgcaggtcaatggactcaatcagcttatcgcttccgtgtgggt
tactctaccgaactctgctcgatcgacgatactcattttggaggattctacgaggaatac
aatcttatcttttaccgcgcgtgcaataga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTGTCGTGGATATTGCTGCATGG 566 95 2110 Antisense
GATACTCGTTCCGATTTCACACTTA 322 423 2218 Antisense
AGGTGTACAGTCTCTTTATTCCAAT 240 57 2339 Antisense
ATTCCAATGACTCGATACCTGCCAA 221 7 2356 Antisense
GATACCTGCCAAATGTTCCACTGGA 117 425 2369 Antisense
TGATGTCCCATCTTCCAAGGTGGTC 208 565 2403 Antisense
GTGGTCAACAACTGTGGCTACATCC 324 489 2422 Antisense
GCTCGTCCACAGAAACGGATGCTCC 655 297 2483 Antisense
TCAATCAGCTTATCGCTTCCGTGTG 518 633 2562 Antisense
TCCGTGTGGGTTACTCTACCGAACT 51 589 2579 Antisense
TATCTTTTACCGCGCGTGCAATAGA 275 659 2655 Antisense
Sequence Source Affymetrix Proprietary Database