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[180692_at]

Description F55G1.7 /REP_DB=WormBase Gene ID /WP=CE07284 /TR=Q20844 /GB=AAB00641.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 77      6grp_total > 77      4grp_total > 03      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 448
1 2 3 4 range
A 88.2
(-2.1)
P 		34.2
(-3)
A 		38.5
(-2.9)
A 		384.9
(3)
P 		351
B 68.3
(-2.7)
P 		65.1
(-2.8)
A 		47.4
(-3)
A 		482.5
(3)
P 		435
C 109.6
(-1.8)
P 		55.4
(-3)
A 		85.2
(-2.3)
P 		330
(3)
P 		275
avr 88.7
(-2.4) 		51.6
(-3) 		57
(-2.9) 		399.1
(3) 		348

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 390
1 2 3 4 5 6 range
A 53.1
(-2.9)
A 		81.2
(-2.3)
P 		50.6
(-3)
P 		62.5
(-2.7)
P 		90.3
(-2.1)
P 		316.2
(3)
P 		266
B 77.6
(-2.7)
P 		61.2
(-3)
P 		62.6
(-3)
P 		61.8
(-3)
P 		129.3
(-1.9)
P 		426.2
(3)
P 		365
C 71.7
(-2.4)
P 		57
(-2.7)
P 		36.5
(-3)
M 		78.5
(-2.3)
P 		114.2
(-1.8)
P 		419.3
(3)
P 		383
avr 67.5
(-2.7) 		66.5
(-2.7) 		49.9
(-3) 		67.6
(-2.7) 		111.3
(-1.9) 		387.2
(3) 		337
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 32.1
(0)
P 		7.4
(-3)
A 		10.1
(-2.7)
A 		56.3
(3)
P 		49
B 21.8
(-2.3)
P 		16.1
(-2.7)
A 		11
(-3)
A 		102.8
(3)
P 		92
C 36.3
(0.1)
P 		15.9
(-3)
A 		29.7
(-0.9)
P 		55.6
(3)
P 		40
avr 30.1
(-1.3) 		13.1
(-3) 		16.9
(-2.6) 		71.6
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 9.8
(-3)
A 		28.9
(-1.3)
P 		11
(-2.9)
P 		15.8
(-2.5)
P 		27.3
(-1.4)
P 		77
(3)
P 		67
B 27
(-2.5)
P 		20.4
(-2.8)
P 		15.2
(-3)
P 		16.4
(-2.9)
P 		52.5
(-1.4)
P 		158.9
(3)
P 		144
C 26.6
(-2.2)
P 		17.4
(-2.6)
P 		9.3
(-3)
M 		15.8
(-2.7)
P 		37
(-1.7)
P 		140.4
(3)
P 		131
avr 21.1
(-2.5) 		22.2
(-2.5) 		11.8
(-3) 		16
(-2.8) 		38.9
(-1.6) 		125.4
(3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180692_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8946
Sequence Type Exemplar sequence
Representative Public ID F55G1.7 NCBI
Target Description F55G1.7 /REP_DB=WormBase Gene ID /WP=CE07284 /TR=Q20844 /GB=AAB00641.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068794(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068794 NCBI Caenorhabditis elegans F55G1.7 (F55G1.7) mRNA, complete cds. 11/11 None
SNAP00000005165 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7466901:7468371:-1 11/11 None
GENEFINDER00000005177 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7466901:7468371:-1 11/11 None
F55G1.7 ENSEMBL cdna:known chromosome:CEL140:IV:7466901:7468446:-1 gene:F55G1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7466906-7468452(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G1.7
Entrez Gene 186328 Entrez gene
SwissProt Q20844 EMBL-EBI
WormBase CE07284 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00641 Hypothetical protein F55G1.7 [Caenorhabditis elegans] ref|NP_501195.1| F55G1.7 [Caenorhabditis elegans] 1.0E-174
blast AAB00641 Hypothetical protein F55G1.7 [Caenorhabditis elegans] ref|NP_501195.1| F55G1.7 [Caenorhabditis elegans] 1.0E-159
blast CAE61887 Hypothetical protein CBG05878 [Caenorhabditis briggsae] 2.0E-64
Sequence
Target Sequence 
>C. ELEGANS:180692_AT
tggagccggaccatcgaatgcagaaattcctgatcgatttatggaaatattccggaattt
gccacaagtaccaatgaaccatatgttgagaatgctcgattggaatgatatcttcagatt
gcaacttgtcgctgggccatttactggttattttgcaaacaaccgtcgtaactatgcatt
gaatcatttggtgcacggaagtgttgatctactcgggaccgaatttgtccgtgtcagacg
ataccacaataatcacttgacaatcaatcacgcacaattcgtcaaaagtcttgaaacagt
caacatgtccactttcttgataagacaggaaggagagcttcgtgccgcgtcatttcatat
tccattactgacatgtcaaaaattggaacttcgaattgtgaatccgattgaaggagatga
tgaatccgaactgatgcaaatattcgagcagatcattgaaaactcccacatcaaacagtt
gaatttaattggcagaaaagttgaaaatcccagagaattgcaaacccgactggataatat
tgcctccagaagctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGCCGGACCATCGAATGCAGAA 4 549 336 Antisense
ATTCCGGAATTTGCCACAAGTACCA 9 3 384 Antisense
GTCGCTGGGCCATTTACTGGTTATT 360 473 463 Antisense
GGAAGTGTTGATCTACTCGGGACCG 625 457 532 Antisense
CTCGGGACCGAATTTGTCCGTGTCA 11 223 547 Antisense
TGTCCGTGTCAGACGATACCACAAT 596 557 561 Antisense
AACAGTCAACATGTCCACTTTCTTG 44 137 630 Antisense
CGCGTCATTTCATATTCCATTACTG 391 253 681 Antisense
GCAGATCATTGAAAACTCCCACATC 608 311 783 Antisense
ATCCCAGAGAATTGCAAACCCGACT 116 39 842 Antisense
GGATAATATTGCCTCCAGAAGCTTA 78 511 867 Antisense
Sequence Source Affymetrix Proprietary Database