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[180691_at]

Description F11D11.4 /REP_DB=WormBase Gene ID /WP=CE15795 /TR=O62152 /GB=CAB04095.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.2
(-2.4)
A 		1.7
(-3)
A 		6.9
(3)
A 		4.4
(0.1)
A 		5
B 1.7
(-2.5)
A 		2.1
(-2.3)
A 		11.8
(3)
A 		0.8
(-3)
A 		11
C 3.9
(-2.6)
A 		2.8
(-3)
A 		10.3
(0.1)
A 		17.5
(3)
A 		15
avr 2.6
(-2.7) 		2.2
(-3) 		9.7
(3) 		7.6
(1.3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.6
(-2.5)
A 		1.9
(-2.2)
A 		3.9
(-0.5)
A 		1
(-3)
A 		7.9
(3)
A 		3.2
(-1.1)
A 		7
B 4.5
(3)
A 		2.7
(0.1)
A 		0.9
(-2.8)
A 		4
(2.2)
A 		0.8
(-3)
A 		2
(-1.1)
A 		4
C 2.6
(-2.3)
A 		2.3
(-2.5)
A 		1.4
(-3)
A 		12
(3)
A 		1.9
(-2.7)
A 		3
(-2.1)
A 		11
avr 2.9
(-1.7) 		2.3
(-2.7) 		2.1
(-3) 		5.7
(3) 		3.5
(-0.7) 		2.7
(-2) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.8
(-1.3)
A 		0.4
(-3)
A 		1.8
(3)
A 		0.6
(-2.1)
A 		1
B 0.5
(-2.3)
A 		0.5
(-2.3)
A 		2.7
(3)
A 		0.2
(-3)
A 		3
C 1.3
(-1.9)
A 		0.8
(-3)
A 		3.6
(3)
A 		3
(1.7)
A 		3
avr 0.9
(-2.1) 		0.6
(-3) 		2.7
(3) 		1.3
(-1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.3
(-2.7)
A 		0.7
(-1.6)
A 		0.8
(-1.4)
A 		0.2
(-3)
A 		2.4
(3)
A 		0.8
(-1.4)
A 		2
B 1.6
(3)
A 		0.9
(-0)
A 		0.2
(-3)
A 		1.1
(0.9)
A 		0.3
(-2.6)
A 		0.7
(-0.9)
A 		1
C 1
(-1.2)
A 		0.7
(-2.1)
A 		0.4
(-3)
A 		2.4
(3)
A 		0.6
(-2.4)
A 		1
(-1.2)
A 		2
avr 1
(1.3) 		0.8
(-0.4) 		0.5
(-3) 		1.2
(3) 		1.1
(2.1) 		0.8
(-0.4) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180691_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13471
Sequence Type Exemplar sequence
Representative Public ID F11D11.4 NCBI
Target Description F11D11.4 /REP_DB=WormBase Gene ID /WP=CE15795 /TR=O62152 /GB=CAB04095.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075262(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075262 NCBI Caenorhabditis elegans F11D11.4 (F11D11.4) mRNA, complete cds. 11/11 A 
F11D11.4 ENSEMBL cdna:known chromosome:CEL140:V:18763952:18766100:1 gene:F11D11.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039941 2/11 Cross Hyb Matching Probes None
GENEFINDER00000039951 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18763951-18766100(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11D11.4
Entrez Gene 184351 Entrez gene
SwissProt O62152 EMBL-EBI
WormBase CE15795 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04095 Hypothetical protein F11D11.4 [Caenorhabditis elegans] ref|NP_507663.1| F11D11.4 [Caenorhabditis elegans] 1.0E-114
blast CAB04096 Hypothetical protein F11D11.3 [Caenorhabditis elegans] ref|NP_507662.1| F11D11.3 [Caenorhabditis elegans] 7.0E-85
blast AAB71253 Hypothetical protein C30E1.8 [Caenorhabditis elegans] ref|NP_510737.1| C30E1.8 [Caenorhabditis elegans] 8.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 6.4E-86
Sequence
Target Sequence 
>C. ELEGANS:180691_AT
agatctcaagctatcagttaccactactgccggtgaaaagtactcatggacaagaacctc
aaccgaatggaagtttggaacctgcagagctggttggagaaaaaataagccttgtaagta
ataatcgtgtagttaatggatcttggacccgtgacgtcacctcaaccggattttatatga
aaccccttggcagtgctgataacactacaattgttaacattaagagagacaccaaacata
ccggattttctggtgcaaatgttgtcgggaatctcccaaatggaggatcggttactgtag
gcttctatggcaacggcacaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATCTCAAGCTATCAGTTACCACT 620 65 74 Antisense
AAGCTATCAGTTACCACTACTGCCG 434 151 81 Antisense
ATCAGTTACCACTACTGCCGGTGAA 670 27 86 Antisense
GTTACCACTACTGCCGGTGAAAAGT 248 437 90 Antisense
CTGCCGGTGAAAAGTACTCATGGAC 179 237 100 Antisense
ACTCATGGACAAGAACCTCAACCGA 586 95 115 Antisense
GAACCTCAACCGAATGGAAGTTTGG 662 343 127 Antisense
GGAAGTTTGGAACCTGCAGAGCTGG 616 529 142 Antisense
GGAACCTGCAGAGCTGGTTGGAGAA 311 531 150 Antisense
CTGTAGGCTTCTATGGCAACGGCAC 646 237 368 Antisense
GGCTTCTATGGCAACGGCACAAAGT 684 537 373 Antisense
Sequence Source Affymetrix Proprietary Database