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[180689_at]

Description T01D1.5 /REP_DB=WormBase Gene ID /WP=CE12950 /TR=P91418 /GB=AAB37886.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 19.4
(-1)
A 		4.9
(-3)
A 		19.7
(-0.9)
A 		48
(3)
A 		43
B 6.6
(-2.3)
A 		15.6
(-0.1)
A 		3.9
(-3)
A 		28
(3)
A 		24
C 29.7
(0.8)
A 		3.3
(-3)
A 		3.9
(-2.9)
A 		45
(3)
M 		42
avr 18.6
(-1) 		7.9
(-3) 		9.2
(-2.8) 		40.3
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 2.1
(-2.4)
A 		5.6
(-0.2)
A 		10.3
(2.7)
A 		1.8
(-2.6)
A 		10.8
(3)
A 		1.1
(-3)
A 		10
B 3.8
(-2.3)
A 		4.6
(-2.1)
A 		26.4
(3)
A 		1.9
(-2.8)
A 		2.2
(-2.7)
A 		1
(-3)
A 		25
C 2.2
(-3)
A 		24.7
(0.2)
A 		20.6
(-0.3)
A 		43.8
(3)
A 		3
(-2.9)
A 		2.4
(-3)
A 		42
avr 2.7
(-2.6) 		11.6
(0.4) 		19.1
(3) 		15.8
(1.9) 		5.3
(-1.7) 		1.5
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 7.1
(3)
A 		1.1
(-3)
A 		5.2
(1.1)
A 		7
(2.9)
A 		6
B 2.1
(-1.6)
A 		3.9
(0.5)
A 		0.9
(-3)
A 		6
(3)
A 		5
C 9.8
(3)
A 		0.9
(-3)
A 		1.4
(-2.7)
A 		7.6
(1.5)
M 		9
avr 6.3
(2.3) 		2
(-3) 		2.5
(-2.4) 		6.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.4
(-2.8)
A 		2
(0.4)
A 		2.2
(0.8)
A 		0.5
(-2.6)
A 		3.3
(3)
A 		0.3
(-3)
A 		3
B 1.3
(-2.1)
A 		1.5
(-1.9)
A 		6.4
(3)
A 		0.5
(-2.9)
A 		0.9
(-2.5)
A 		0.4
(-3)
A 		6
C 0.8
(-3)
A 		7.5
(2)
A 		5.3
(0.4)
A 		8.8
(3)
A 		1
(-2.9)
A 		0.8
(-3)
A 		8
avr 0.8
(-2.6) 		3.7
(1.7) 		4.6
(3) 		3.3
(1.1) 		1.7
(-1.2) 		0.5
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180689_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4895
Sequence Type Exemplar sequence
Representative Public ID T01D1.5 NCBI
Target Description T01D1.5 /REP_DB=WormBase Gene ID /WP=CE12950 /TR=P91418 /GB=AAB37886.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061277(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061277 NCBI Caenorhabditis elegans T01D1.5 (T01D1.5) mRNA, complete cds. 11/11 None
SNAP00000043217 ENSEMBL cdna:SNAP chromosome:CEL140:II:187371:189067:-1 10/11 None
GENEFINDER00000043225 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:187371:189202:-1 10/11 None
T01D1.5 ENSEMBL cdna:known chromosome:CEL140:II:187371:189202:-1 gene:T01D1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:187370-189202(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01D1.5
Entrez Gene 187950 Entrez gene
SwissProt P91418 EMBL-EBI
WormBase CE12950 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37886 Hypothetical protein T01D1.5 [Caenorhabditis elegans] ref|NP_493678.1| T01D1.5 [Caenorhabditis elegans] 0.0
blast AAB37886 Hypothetical protein T01D1.5 [Caenorhabditis elegans] ref|NP_493678.1| T01D1.5 [Caenorhabditis elegans] 1.0E-172
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493678.1 7 31-53,66-83,112-134,155-177,197-219,231-253,268-290
T01D1.5 7 31-53,66-83,112-134,155-177,197-219,231-253,268-290
SNAP00000043217 7 4-25,37-54,83-105,125-147,176-198,218-240,255-277
GENEFINDER00000043225 7 31-53,66-83,112-134,154-176,205-227,247-269,284-306
Sequence
Target Sequence 
>C. ELEGANS:180689_AT
ataacacggtgaacgcagcttccagcatcaaagatttggaatattcaacggtttatctca
acacggcaatgttactcttttacaaatgcgcaaagtttgtctatttaatgccaataattc
aatcggaatatcgaatcaaaaaagagcgtgttatattgtggactcttatctgtcaaatca
taactcaactgatatttctacatttcaatgtagtcgtggtgatgtttatggttttggctg
gtaacggaaaaaatggttatggagcatttttcattgactatgctctttgtagcccaatgt
ttgagaccctaggaacgcttatcttattggagccatgtgcaagactgtttaactatcgtg
caacacaaacagccactgttagaccagcgttgattaattttgaaagaattaaccattcgg
aaccacagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAACACGGTGAACGCAGCTTCCAG 642 23 554 Antisense
TCAACGGTTTATCTCAACACGGCAA 278 629 598 Antisense
ACACGGCAATGTTACTCTTTTACAA 164 111 614 Antisense
ATTGTGGACTCTTATCTGTCAAATC 155 5 708 Antisense
GGTGATGTTTATGGTTTTGGCTGGT 191 501 771 Antisense
TTGACTATGCTCTTTGTAGCCCAAT 545 703 827 Antisense
GTAGCCCAATGTTTGAGACCCTAGG 478 457 842 Antisense
GACCCTAGGAACGCTTATCTTATTG 705 379 858 Antisense
GGAGCCATGTGCAAGACTGTTTAAC 159 523 882 Antisense
AACAGCCACTGTTAGACCAGCGTTG 217 137 921 Antisense
GAATTAACCATTCGGAACCACAGTT 590 255 959 Antisense
Sequence Source Affymetrix Proprietary Database