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[180688_at]

Description C38C3.7 /REP_DB=WormBase Gene ID /WP=CE08644 /TR=O17078 /GB=AAB70336.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 24      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 3.5
(-3)
A 		7.6
(-2.7)
A 		40.4
(-0.2)
A 		83.4
(3)
A 		80
B 9.1
(1)
A 		8.2
(0.4)
A 		3.1
(-3)
A 		12.2
(3)
A 		9
C 2.8
(-3)
A 		12.8
(-0.1)
A 		23.8
(3)
A 		4.3
(-2.6)
A 		21
avr 5.1
(-3) 		9.5
(-2.1) 		22.4
(0.7) 		33.3
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 21.4
(2.7)
A 		10.7
(-3)
A 		21.9
(3)
A 		12.7
(-1.9)
A 		13
(-1.8)
A 		21
(2.5)
A 		11
B 4.9
(-2.6)
A 		2.7
(-3)
A 		9.5
(-1.7)
A 		4.5
(-2.7)
A 		30.1
(2.2)
A 		34.3
(3)
A 		32
C 29.8
(1.2)
A 		38.5
(3)
A 		10.1
(-3)
A 		26
(0.4)
A 		10.2
(-3)
A 		33
(1.8)
A 		28
avr 18.7
(-1.1) 		17.3
(-1.7) 		13.8
(-3) 		14.4
(-2.8) 		17.8
(-1.5) 		29.4
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.3
(-3)
A 		1.7
(-2.8)
A 		10.6
(2.1)
A 		12.2
(3)
A 		11
B 2.9
(3)
A 		2
(0.5)
A 		0.7
(-3)
A 		2.6
(2.2)
A 		2
C 0.9
(-2.8)
A 		3.7
(-0.6)
A 		8.3
(3)
A 		0.7
(-3)
A 		8
avr 1.7
(-3) 		2.5
(-2) 		6.5
(3) 		5.2
(1.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3.9
(-0.8)
A 		3.8
(-1.1)
A 		4.8
(2.1)
A 		3.2
(-3)
A 		3.9
(-0.8)
A 		5.1
(3)
A 		2
B 1.7
(-2.6)
A 		0.9
(-3)
A 		2.3
(-2.3)
A 		1.2
(-2.8)
A 		12.2
(2.7)
A 		12.8
(3)
A 		12
C 11
(2.5)
A 		11.8
(3)
A 		2.6
(-3)
A 		5.2
(-1.3)
A 		3.3
(-2.5)
A 		11.1
(2.5)
A 		9
avr 5.5
(-0.9) 		5.5
(-0.9) 		3.2
(-3) 		3.2
(-3) 		6.5
(0) 		9.7
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180688_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15460
Sequence Type Exemplar sequence
Representative Public ID C38C3.7 NCBI
Target Description C38C3.7 /REP_DB=WormBase Gene ID /WP=CE08644 /TR=O17078 /GB=AAB70336.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071031 NCBI Caenorhabditis elegans C38C3.7 (C38C3.7) mRNA, complete cds. 11/11 None
SNAP00000040093 ENSEMBL cdna:SNAP chromosome:CEL140:V:1501249:1504128:-1 11/11 None
GENEFINDER00000040102 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1501249:1504128:-1 11/11 None
C38C3.7 ENSEMBL cdna:known chromosome:CEL140:V:1501249:1504128:-1 gene:C38C3.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1501248-1504128(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C38C3.7
Entrez Gene 183302 Entrez gene
SwissProt O17078 EMBL-EBI
WormBase CE08644 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70336 Hypothetical protein C38C3.7 [Caenorhabditis elegans] ref|NP_503432.1| C38C3.7 [Caenorhabditis elegans] 0.0
blast AAK70659 Hypothetical protein Y40B10A.4 [Caenorhabditis elegans] ref|NP_503556.1| Y40B10A.4 [Caenorhabditis elegans] 4.0E-96
blast CAB03304 Hypothetical protein T06C12.4 [Caenorhabditis elegans] ref|NP_506963.1| T06C12.4 [Caenorhabditis elegans] 7.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.8E-29
Sequence
Target Sequence 
>C. ELEGANS:180688_AT
gacgagacgtacttggagatagccaaacgagacttaaaattgatcgttggaaatcgaaat
cttgagattaaaaacttcaaacatcacatttgggatatggaagatgttgaatttcggaag
aaatgtatggacgacatggatgacattctaaagccagcacaattcctgactgctcatgaa
attgatatctcaagccgaacattctccaaactggaggaattcatatcaatgttccattct
gtccataagcttgtttatagtccgaaacaaggttccaacgatgacaaatacgaaaaactt
gttggatcagaacaatggaagaagattcgggaattcagatcacgtgccgtgctcaatatt
ccaattggtcatttcttgcattttgaagattttacagtttttctttggacgctctcaacg
gatgatatggaacaaattatgaagatgctcgatgagaatcccggccgccacagagctttc
atcgaggtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAGACGTACTTGGAGATAGCCA 566 377 1369 Antisense
GGATGACATTCTAAAGCCAGCACAA 641 513 1506 Antisense
GCACAATTCCTGACTGCTCATGAAA 629 317 1525 Antisense
GATATCTCAAGCCGAACATTCTCCA 128 427 1552 Antisense
GTTCCATTCTGTCCATAAGCTTGTT 527 441 1599 Antisense
GGAATTCAGATCACGTGCCGTGCTC 581 533 1698 Antisense
GTGCCGTGCTCAATATTCCAATTGG 236 479 1712 Antisense
TTACAGTTTTTCTTTGGACGCTCTC 82 683 1760 Antisense
GGACGCTCTCAACGGATGATATGGA 594 523 1775 Antisense
AGATGCTCGATGAGAATCCCGGCCG 307 67 1811 Antisense
GCCACAGAGCTTTCATCGAGGTCAA 158 279 1835 Antisense
Sequence Source Affymetrix Proprietary Database