[Home] | [Total List]

[180686_at]

Description K02A11.2 /REP_DB=WormBase Gene ID /WP=CE06056 /TR=Q21108 /GB=CAA99879.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 5.3
(-3)
A 		5.3
(-3)
A 		28.9
(2)
A 		33.8
(3)
A 		29
B 30.8
(3)
A 		3.2
(-3)
A 		4.1
(-2.8)
A 		4.3
(-2.8)
A 		28
C 1.7
(-3)
A 		4.2
(-2.8)
A 		3.1
(-2.9)
A 		83.7
(3)
A 		82
avr 12.6
(-1.6) 		4.2
(-3) 		12
(-1.7) 		40.6
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 3.7
(-1.3)
A 		2.3
(-3)
A 		7.2
(3)
A 		6.6
(2.3)
A 		6.4
(2)
A 		4
(-0.9)
A 		5
B 2.8
(-2.4)
A 		4
(-0.7)
A 		6.3
(2.7)
A 		2.7
(-2.6)
A 		2.4
(-3)
A 		6.5
(3)
A 		4
C 2.8
(-3)
A 		5.9
(1.7)
A 		3.4
(-2.1)
A 		4.8
(0)
A 		3.8
(-1.5)
A 		6.8
(3)
A 		4
avr 3.1
(-3) 		4.1
(-0.8) 		5.6
(2.6) 		4.7
(0.6) 		4.2
(-0.6) 		5.8
(3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.9
(-2.3)
A 		1.1
(-3)
A 		7.6
(3)
A 		5
(0.6)
A 		7
B 9.8
(3)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		0.9
(-2.9)
A 		9
C 0.6
(-3)
A 		1.2
(-2.7)
A 		1.1
(-2.8)
A 		14.1
(3)
A 		14
avr 4.1
(0.3) 		1
(-3) 		3.2
(-0.7) 		6.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.7
(-3)
A 		0.8
(-2.5)
A 		1.6
(1.5)
A 		1.7
(2)
A 		1.9
(3)
A 		1
(-1.5)
A 		1
B 1
(-1.9)
A 		1.3
(-0.9)
A 		1.5
(-0.2)
A 		0.7
(-3)
A 		1
(-1.9)
A 		2.4
(3)
A 		2
C 1.1
(-2.1)
A 		1.8
(0.9)
A 		0.9
(-3)
A 		1
(-2.6)
A 		1.2
(-1.7)
A 		2.3
(3)
A 		1
avr 0.9
(-3) 		1.3
(-0.6) 		1.3
(-0.6) 		1.1
(-1.8) 		1.4
(-0) 		1.9
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180686_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1209
Sequence Type Exemplar sequence
Representative Public ID K02A11.2 NCBI
Target Description K02A11.2 /REP_DB=WormBase Gene ID /WP=CE06056 /TR=Q21108 /GB=CAA99879.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060188(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060188 NCBI Caenorhabditis elegans K02A11.2 (K02A11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000037758 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9748805:9754089:1 10/11 None
SNAP00000037753 ENSEMBL cdna:SNAP chromosome:CEL140:I:9753161:9753649:1 9/11 None
K02A11.2 ENSEMBL cdna:known chromosome:CEL140:I:9753077:9754089:1 gene:K02A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9753007-9754020(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02A11.2
Entrez Gene 186863 Entrez gene
SwissProt Q21108 EMBL-EBI
WormBase CE06056 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99881 Hypothetical protein K02A11.1a [Caenorhabditis elegans] ref|NP_492588.1| GEI-4(Four) Interacting protein family member (gfi-2) [Caenorhabditis elegans] 0.0
blast CAC42316 Hypothetical protein K02A11.1b [Caenorhabditis elegans] ref|NP_492587.1| GEI-4(Four) Interacting protein family member (gfi-2) [Caenorhabditis elegans] 0.0
blast CAE60239 Hypothetical protein CBG03811 [Caenorhabditis briggsae] 0.0
blast CAA99879 Hypothetical protein K02A11.2 [Caenorhabditis elegans] ref|NP_492589.1| K02A11.2 [Caenorhabditis elegans] 5.0E-93
blast CAB05891 Hypothetical protein B0379.2 [Caenorhabditis elegans] ref|NP_492656.1| B0379.2 [Caenorhabditis elegans] 3.0E-52
blast CAA99879 Hypothetical protein K02A11.2 [Caenorhabditis elegans] ref|NP_492589.1| K02A11.2 [Caenorhabditis elegans] 1.0E-51
blast CAA21730 Hypothetical protein Y106G6E.3 [Caenorhabditis elegans] ref|NP_492691.1| Y106G6E.3 [Caenorhabditis elegans] 5.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 3.3
Pfam IPR002110 EMBL-EBI Ankyrin 2.4E-9
Pfam IPR002110 EMBL-EBI Ankyrin 4.2E-10
Pfam IPR002110 EMBL-EBI Ankyrin 1.0E-6
Pfam IPR002110 EMBL-EBI Ankyrin 6.7E-5
Sequence
Target Sequence 
>C. ELEGANS:180686_AT
aggaggatttcttacaacttgttgtgaaatgttttccaattgcaacatttatagtattca
ttacatcatgtgtatgacaagtaaaccacaaaaaaccgaaacaatttcctcgtcgcagtc
agtgacagaatcatctgaagaatctgaaaaagaagcaataatcatagaaacgaagaatcc
tttgatgctcgatgatgtgatttccgaagacagaaacgtcgcatgtggcaaccagaaaga
ttccagcaaatcagctgaaactgcagaaaagaaaaaagaagaatcgaaagcagaacaaga
attcattttagatgaaaccaatccacattttgcatttcttcttgctggagaaaatcgaga
tcaagctcaaacatttttgcatggaaaaattgcatatgagcattcgaatgcatttcagtg
ggcaatgaagaaacgattggcttttgatgaaggatgctggaagcacttgagccgcagaat
tggagctattagagcagagggatttgaagtaagagtgaatacgcgccaagcaaggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAGGATTTCTTACAACTTGTTGT 166 57 30 Antisense
ACCGAAACAATTTCCTCGTCGCAGT 197 89 124 Antisense
TTTCCTCGTCGCAGTCAGTGACAGA 688 669 134 Antisense
AACGAAGAATCCTTTGATGCTCGAT 309 145 198 Antisense
GATGCTCGATGATGTGATTTCCGAA 115 415 213 Antisense
GAAACGTCGCATGTGGCAACCAGAA 113 359 242 Antisense
GATCAAGCTCAAACATTTTTGCATG 675 421 388 Antisense
GCATTCGAATGCATTTCAGTGGGCA 675 307 429 Antisense
GATGCTGGAAGCACTTGAGCCGCAG 702 413 482 Antisense
AGCACTTGAGCCGCAGAATTGGAGC 397 75 491 Antisense
GAGTGAATACGCGCCAAGCAAGGGA 92 397 542 Antisense
Sequence Source Affymetrix Proprietary Database