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[180684_s_at]

Description F29C12.2 /REP_DB=WormBase Gene ID /WP=CE23689 /TR=Q9TVP6 /GB=CAB54503.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 94      6grp_total > 69      4grp_total > 22      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 449
1 2 3 4 range
A 571.5
(1.3)
P 		395.6
(-1.4)
P 		290.7
(-3)
P 		682.6
(3)
P 		392
B 503.7
(2.5)
P 		301.1
(-2)
P 		256
(-3)
P 		528.3
(3)
P 		272
C 524.5
(3)
P 		233.2
(-3)
P 		275.5
(-2.1)
P 		457.3
(1.6)
P 		291
avr 533.2
(2.5) 		310
(-2.2) 		274.1
(-3) 		556.1
(3) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 728
1 2 3 4 5 6 range
A 529.2
(-1.4)
P 		508.9
(-1.6)
P 		348.8
(-3)
P 		391.2
(-2.6)
P 		547.9
(-1.2)
P 		1030.1
(3)
P 		681
B 459.9
(-1.3)
P 		364.2
(-2.3)
P 		302.4
(-3)
P 		381.5
(-2.1)
P 		486.3
(-1)
P 		845.3
(3)
P 		543
C 400.4
(-2.2)
P 		379.2
(-2.5)
P 		342.3
(-3)
P 		449
(-1.5)
P 		554
(0.1)
P 		758.1
(3)
P 		416
avr 463.2
(-1.6) 		417.4
(-2.1) 		331.2
(-3) 		407.2
(-2.2) 		529.4
(-0.8) 		877.8
(3) 		547
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 208.1
(3)
P 		85.9
(-2.6)
P 		76
(-3)
P 		99.9
(-1.9)
P 		132
B 160.6
(3)
P 		74.4
(-2.1)
P 		59.3
(-3)
P 		112.6
(0.2)
P 		101
C 173.6
(3)
P 		67
(-3)
P 		96
(-1.4)
P 		77.1
(-2.4)
P 		107
avr 180.8
(3) 		75.8
(-3) 		77.1
(-2.9) 		96.5
(-1.8) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 97.6
(-2.3)
P 		181
(0.6)
P 		76
(-3)
P 		99.2
(-2.2)
P 		165.3
(0.1)
P 		250.8
(3)
P 		175
B 160
(-0.9)
P 		121.2
(-1.8)
P 		73.4
(-3)
P 		101
(-2.3)
P 		197.6
(0.1)
P 		315.2
(3)
P 		242
C 148.4
(-0.8)
P 		115.7
(-2)
P 		87.1
(-3)
P 		90.3
(-2.9)
P 		179.3
(0.3)
P 		253.8
(3)
P 		167
avr 135.3
(-1.3) 		139.3
(-1.1) 		78.8
(-3) 		96.8
(-2.4) 		180.7
(0.1) 		273.3
(3) 		195
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180684_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4012
Sequence Type Exemplar sequence
Representative Public ID F29C12.2 NCBI
Target Description F29C12.2 /REP_DB=WormBase Gene ID /WP=CE23689 /TR=Q9TVP6 /GB=CAB54503.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064383(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064383 NCBI Caenorhabditis elegans F29C12.2 (F29C12.2) mRNA, complete cds. 11/11 None
F29C12.2 ENSEMBL cdna:known chromosome:CEL140:II:13098145:13111185:-1 gene:F29C12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014922 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13098402-13104607(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29C12.2
Entrez Gene 185114 Entrez gene
SwissProt Q9TVP6 EMBL-EBI
WormBase CE23689 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54228 Hypothetical protein F29C12.2 [Caenorhabditis elegans] emb|CAB54503.1| Hypothetical protein F29C12.2 [Caenorhabditis elegans] ref|NP_496784.1| F29C12.2 [Caenorhabditis elegans] 0.0
blast CAE59417 Hypothetical protein CBG02786 [Caenorhabditis briggsae] 0.0
blast XP_536496 PREDICTED: similar to rapamycin-insensitive companion of mTOR [Canis familiaris] 7.0E-22
Sequence
Target Sequence 
>C. ELEGANS:180684_S_AT
gaggaacgtcatttcgctgactaccgtcgtcaagtccttcgcgatccatggctctacaat
gagctcaaaaaagaggataacacagtgaagaagactatcaatgtggtcccaattcagaca
gtcgcattaccgacggaaatcgaaattatgtgcggaaacatttttccagccaaaccgaaa
tcggatccgatcttttcattccacgagaacgacgactcggcaggcgtcgaggatcgtgga
gcccgaaccggacacgctaggagtgggattcatattcagccacactctgcgtatcgatgc
tttcattgtagtagtaatgaggattcagtcagaatataccctcacccagatgctccgatg
ctccgaaaagaggttctcgggcacgtggatatgctagagatcaaggaatatcctgcgaag
agattgattggactccgccaacaccacccatggctattcgaatggccatgcatgtatgct
gatgttctcgagctgctagacgaatatcgattcaaaccacactcgagagcattcctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAACGTCATTTCGCTGACTACC 397 405 1618 Antisense
GTGGTCCCAATTCAGACAGTCGCAT 614 489 1720 Antisense
ATCGGATCCGATCTTTTCATTCCAC 704 33 1797 Antisense
GCAGGCGTCGAGGATCGTGGAGCCC 302 311 1837 Antisense
GGATTCATATTCAGCCACACTCTGC 508 509 1883 Antisense
ACACTCTGCGTATCGATGCTTTCAT 98 111 1899 Antisense
TTCAGTCAGAATATACCCTCACCCA 142 689 1941 Antisense
GAGGTTCTCGGGCACGTGGATATGC 358 403 1987 Antisense
CAACACCACCCATGGCTATTCGAAT 268 189 2056 Antisense
GTATGCTGATGTTCTCGAGCTGCTA 555 453 2091 Antisense
AAACCACACTCGAGAGCATTCCTGC 129 125 2131 Antisense
Sequence Source Affymetrix Proprietary Database