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[180683_at]

Description K09C6.5 /REP_DB=WormBase Gene ID /WP=CE11996 /TR=O16942 /GB=AAB70672.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 02      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 29.8
(-1.6)
A 		16.6
(-2.6)
A 		10.8
(-3)
A 		92.4
(3)
A 		82
B 53.6
(-0.6)
A 		27.3
(-3)
A 		57.9
(-0.2)
A 		93.8
(3)
A 		67
C 6.7
(-3)
A 		21.2
(-2.2)
A 		17.5
(-2.4)
A 		112.1
(3)
M 		105
avr 30
(-2.4) 		21.7
(-3) 		28.7
(-2.5) 		99.4
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 5.7
(-2.9)
A 		22.6
(-1.2)
A 		63
(3)
A 		41.1
(0.7)
A 		31
(-0.3)
A 		5.2
(-3)
A 		58
B 7.3
(-3)
A 		49
(3)
P 		41.9
(2)
A 		27.8
(-0.1)
A 		36.1
(1.1)
A 		26.5
(-0.2)
A 		42
C 31.7
(-1.8)
A 		60
(1.5)
A 		37.3
(-1.2)
A 		72.7
(3)
A 		34.9
(-1.5)
A 		21.8
(-3)
A 		51
avr 14.9
(-3) 		43.9
(2.4) 		47.4
(3) 		47.2
(3) 		34
(0.5) 		17.8
(-2.5) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.8
(1.5)
A 		3.6
(-2.6)
A 		2.8
(-3)
A 		13.5
(3)
A 		11
B 17.1
(1.7)
A 		6.7
(-3)
A 		13.4
(0)
A 		20
(3)
A 		13
C 2.2
(-3)
A 		6.1
(-1.6)
A 		6.1
(-1.6)
A 		18.9
(3)
M 		17
avr 10
(-0.8) 		5.5
(-3) 		7.4
(-2.1) 		17.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.1
(-3)
A 		8
(0.3)
A 		13.7
(3)
A 		10.4
(1.4)
A 		9.4
(1)
A 		1.3
(-2.9)
A 		13
B 2.5
(-3)
A 		16.3
(3)
P 		10.2
(0.3)
A 		7.4
(-0.9)
A 		14.7
(2.3)
A 		9.9
(0.2)
A 		14
C 11.8
(-0.5)
A 		18.3
(3)
A 		9.5
(-1.8)
A 		14.6
(1)
A 		11.3
(-0.8)
A 		7.3
(-3)
A 		11
avr 5.1
(-3) 		14.2
(3) 		11.1
(1) 		10.8
(0.8) 		11.8
(1.4) 		6.2
(-2.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180683_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15831
Sequence Type Exemplar sequence
Representative Public ID K09C6.5 NCBI
Target Description K09C6.5 /REP_DB=WormBase Gene ID /WP=CE11996 /TR=O16942 /GB=AAB70672.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070939(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070939 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-13) (srbc-13) mRNA, complete cds. 11/11 None
GENEFINDER00000012279 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:846545:852939:1 10/11 None
K09C6.5 ENSEMBL cdna:known chromosome:CEL140:V:846545:848688:1 gene:K09C6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012270 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:846544-848688(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-13
Ensembl K09C6.5
Entrez Gene 187202 Entrez gene
SwissProt O16942 EMBL-EBI
WormBase CE11996 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70671 Serpentine receptor, class bc (class b-like) protein 12 [Caenorhabditis elegans] ref|NP_503341.2| Serpentine Receptor, class BC (class B-like) family member (srbc-12) [Caenorhabditis elegans] 1.0E-146
blast AAB70672 Serpentine receptor, class bc (class b-like) protein 13 [Caenorhabditis elegans] ref|NP_503340.1| Serpentine Receptor, class BC (class B-like) family member (srbc-13) [Caenorhabditis elegans] 1.0E-144
blast CAE74168 Hypothetical protein CBG21841 [Caenorhabditis briggsae] 1.0E-132
blast AAB70672 Serpentine receptor, class bc (class b-like) protein 13 [Caenorhabditis elegans] ref|NP_503340.1| Serpentine Receptor, class BC (class B-like) family member (srbc-13) [Caenorhabditis elegans] 1.0E-125
blast AAB70671 Serpentine receptor, class bc (class b-like) protein 12 [Caenorhabditis elegans] ref|NP_503341.2| Serpentine Receptor, class BC (class B-like) family member (srbc-12) [Caenorhabditis elegans] 6.0E-92
blast AAC25877 Serpentine receptor, class bc (class b-like) protein 20 [Caenorhabditis elegans] ref|NP_503580.2| Serpentine Receptor, class BC (class B-like) family member (srbc-20) [Caenorhabditis elegans] 1.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 9.1E-109
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 2.5E-102
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503340.1 5 5-27,40-62,77-99,111-133,175-194
K09C6.5 5 5-27,40-62,77-99,111-133,175-194
GENEFINDER00000012279 9 5-27,40-62,77-99,111-133,175-194,286-308,323-345,366-388,421-440
Sequence
Target Sequence 
>C. ELEGANS:180683_AT
gatcaatcctaatcctattcatttcagtggaacgggtcattgctgtgtatttcccgatat
ttttctacaaatttcatacgttttgcccgcgatttgtcataattatagtagccattatct
atgggctcaccgaggacattgtgctctatgtattttgcgattttcaactcactattccag
aaaattgtacagctctgggatgtgctataaattcatgtttctatcggtattggaccactc
ataaatcgatagttttcgcattgatatttttgtttgcatttttcttgtgctcaaaattgt
tcatgctcaataaatcagagaaaaaagagaggaacgagcaacccaggataaaccgtcttg
caatgatagatgcagccaatgtgctcttatccgagtttcttccaatattcgctgccaatc
agttggctcaggcaggatttttcaattttcaaacccttggctcatatgaagtagtggcaa
aaaagtttggatgtgccgtggaagccatgttggttttatacattttgagctacaaacgtc
agagcaaggacgcgatcgattcaaagtttccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAATCCTAATCCTATTCATTTC 620 421 287 Antisense
GGGTCATTGCTGTGTATTTCCCGAT 664 495 320 Antisense
CGTTTTGCCCGCGATTTGTCATAAT 142 247 365 Antisense
GGCTCACCGAGGACATTGTGCTCTA 177 539 410 Antisense
GTGCTCTATGTATTTTGCGATTTTC 514 479 427 Antisense
TGCGATTTTCAACTCACTATTCCAG 405 583 442 Antisense
AACCCAGGATAAACCGTCTTGCAAT 218 147 626 Antisense
AATGTGCTCTTATCCGAGTTTCTTC 10 165 664 Antisense
TTCAATTTTCAAACCCTTGGCTCAT 279 683 727 Antisense
GGATGTGCCGTGGAAGCCATGTTGG 330 515 775 Antisense
GACGCGATCGATTCAAAGTTTCCAG 310 381 835 Antisense
Sequence Source Affymetrix Proprietary Database