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[180682_at]

Description F13H6.2 /REP_DB=WormBase Gene ID /WP=CE09374 /TR=O16349 /GB=AAB65884.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 2.5
(-3)
A 		8.6
(3)
A 		3.4
(-2.1)
A 		7.2
(1.6)
A 		6
B 17.3
(3)
A 		5.6
(-2.9)
A 		5.5
(-3)
A 		6.7
(-2.4)
A 		12
C 2.1
(-3)
A 		2.7
(-2.9)
A 		1.9
(-3)
A 		40.1
(3)
A 		38
avr 7.3
(-1.5) 		5.6
(-2.2) 		3.6
(-3) 		18
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 26.5
(3)
A 		5.4
(-2.1)
A 		1.6
(-3)
A 		3.2
(-2.6)
A 		4.5
(-2.3)
A 		1.5
(-3)
A 		25
B 15.5
(0.8)
A 		20.1
(2.1)
A 		3.2
(-2.5)
A 		8.2
(-1.1)
A 		23.6
(3)
A 		1.3
(-3)
A 		22
C 3.6
(-3)
A 		7.6
(0)
A 		11.5
(3)
A 		7.4
(-0.1)
A 		4.4
(-2.4)
A 		9
(1.1)
A 		8
avr 15.2
(3) 		11
(0.8) 		5.4
(-2.2) 		6.3
(-1.7) 		10.8
(0.7) 		3.9
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.9
(-3)
A 		1.9
(3)
A 		0.9
(-3)
A 		1.1
(-1.8)
A 		1
B 5.5
(3)
A 		1.4
(-2.9)
A 		1.3
(-3)
A 		1.4
(-2.9)
A 		4
C 0.7
(-3)
A 		0.8
(-2.9)
A 		0.7
(-3)
A 		6.8
(3)
A 		6
avr 2.4
(1) 		1.4
(-1.9) 		1
(-3) 		3.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4.9
(3)
A 		1.9
(-0.9)
A 		0.3
(-3)
A 		0.8
(-2.3)
A 		1.3
(-1.7)
A 		0.4
(-2.9)
A 		5
B 5.4
(0.2)
A 		6.7
(1.1)
A 		0.8
(-2.8)
A 		2.2
(-1.9)
A 		9.6
(3)
A 		0.5
(-3)
A 		9
C 1.3
(-3)
A 		2.3
(0.5)
A 		2.9
(2.6)
A 		1.5
(-2.3)
A 		1.4
(-2.6)
A 		3
(3)
A 		2
avr 3.9
(2.6) 		3.6
(1.9) 		1.3
(-3) 		1.5
(-2.6) 		4.1
(3) 		1.3
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180682_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11846
Sequence Type Exemplar sequence
Representative Public ID F13H6.2 NCBI
Target Description F13H6.2 /REP_DB=WormBase Gene ID /WP=CE09374 /TR=O16349 /GB=AAB65884.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F13H6.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F13H6.2 F13H6.2 /REP_DB=WormBase Gene ID /WP=CE09374 /TR=O16349 /GB=AAB65884.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6359860-6360386(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:180682_AT
atggacacaaaccacttttatcgtcactactgcttgtggctgtcggctcctcagctccgc
tatcaacttcactgttcgccttcctccgccgacgccccgccgaagacgtttctattgtct
gaaagtacaagagatcgtaaattggaatctgataatttaggccacactgttttcaaattg
agaatatcaaatgtttcaagggtcacttggatttcaaaattattgaatgtaaggtgggtc
gcagaagtttgcgtggaaaatgagctctcgtcgcaggagaaggccgattggtcgagactt
gga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGACACAAACCACTTTTATCGTC 75 53 13 Antisense
CACTTTTATCGTCACTACTGCTTGT 468 195 25 Antisense
TATCGTCACTACTGCTTGTGGCTGT 130 659 31 Antisense
CCCGCCGAAGACGTTTCTATTGTCT 492 259 108 Antisense
GGAATCTGATAATTTAGGCCACACT 154 533 156 Antisense
AGGCCACACTGTTTTCAAATTGAGA 576 51 171 Antisense
GTTTCAAGGGTCACTTGGATTTCAA 707 447 205 Antisense
GGTGGGTCGCAGAAGTTTGCGTGGA 353 499 245 Antisense
TTGCGTGGAAAATGAGCTCTCGTCG 12 693 261 Antisense
GAGCTCTCGTCGCAGGAGAAGGCCG 430 387 274 Antisense
GAAGGCCGATTGGTCGAGACTTGGA 331 333 291 Antisense
Sequence Source Affymetrix Proprietary Database