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[180681_at]

Description T22B2.1 /REP_DB=WormBase Gene ID /WP=CE13928 /TR=O45195 /GB=AAC04439.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 43      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 29.4
(-0.3)
A 		62.3
(3)
A 		2.3
(-3)
A 		5.6
(-2.7)
A 		60
B 24.6
(1.7)
A 		19.1
(0.6)
A 		30.8
(3)
A 		2
(-3)
A 		29
C 32.2
(-2.9)
A 		43.3
(-0.9)
A 		31.7
(-3)
A 		65.5
(3)
A 		34
avr 28.7
(-0.9) 		41.6
(3) 		21.6
(-3) 		24.4
(-2.2) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 22.5
(-2.2)
A 		32
(-1.2)
A 		29.6
(-1.5)
A 		14
(-3)
A 		39.7
(-0.5)
A 		75.2
(3)
A 		61
B 39.1
(-1.1)
A 		21.5
(-2.4)
A 		13.8
(-3)
A 		16.6
(-2.8)
A 		31.9
(-1.6)
A 		92.5
(3)
M 		79
C 17.9
(-1.3)
A 		30.6
(0.1)
A 		14
(-1.8)
A 		21.4
(-0.9)
A 		3
(-3)
A 		56
(3)
P 		53
avr 26.5
(-2) 		28
(-1.9) 		19.1
(-2.8) 		17.3
(-3) 		24.9
(-2.2) 		74.6
(3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 10.7
(1.7)
A 		13.5
(3)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		13
B 7.8
(3)
A 		4.7
(0.5)
A 		7.1
(2.4)
A 		0.4
(-3)
A 		7
C 10.7
(-3)
A 		12.4
(3)
A 		11
(-1.9)
A 		11
(-1.9)
A 		2
avr 9.7
(2.5) 		10.2
(3) 		6.2
(-0.9) 		4.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 4.1
(-2.8)
A 		11.4
(0.2)
A 		6.4
(-1.9)
A 		3.6
(-3)
A 		12
(0.4)
A 		18.3
(3)
A 		15
B 13.6
(-1)
A 		7.2
(-2.3)
A 		3.3
(-3)
A 		4.4
(-2.8)
A 		13
(-1.1)
A 		34.5
(3)
M 		31
C 6.6
(-1.1)
A 		9.3
(-0.2)
A 		3.6
(-2.1)
A 		4.3
(-1.9)
A 		1
(-3)
A 		18.8
(3)
P 		18
avr 8.1
(-1.8) 		9.3
(-1.4) 		4.4
(-2.9) 		4.1
(-3) 		8.7
(-1.6) 		23.9
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180681_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18239
Sequence Type Exemplar sequence
Representative Public ID T22B2.1 NCBI
Target Description T22B2.1 /REP_DB=WormBase Gene ID /WP=CE13928 /TR=O45195 /GB=AAC04439.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076279(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076279 NCBI Caenorhabditis elegans T22B2.1 (T22B2.1) mRNA, complete cds. 11/11 None
SNAP00000014687 ENSEMBL cdna:SNAP chromosome:CEL140:X:3926084:3929470:1 11/11 None
GENEFINDER00000014692 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3926084:3929470:1 11/11 None
T22B2.1 ENSEMBL cdna:known chromosome:CEL140:X:3926084:3929470:1 gene:T22B2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3926084-3929471(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22B2.1
Entrez Gene 188716 Entrez gene
SwissProt O45195 EMBL-EBI
WormBase CE13928 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04439 Hypothetical protein T22B2.1 [Caenorhabditis elegans] ref|NP_508680.1| T22B2.1 [Caenorhabditis elegans] 0.0
blast AAC69348 Hypothetical protein Y73C8C.8 [Caenorhabditis elegans] ref|NP_503853.1| Y73C8C.8 [Caenorhabditis elegans] 0.0
blast CAA93773 Hypothetical protein F46F2.1 [Caenorhabditis elegans] ref|NP_510530.1| F46F2.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180681_AT
aacgttccataaccaacaatactcaaagattacttgaagaaactgaaatcattcataaaa
ttttagtcgatactctgaaagctcaggaaatttttgagtcagagagtccactgaacaaga
taactgtcatgacctcaagaatttgcgaaacgtcacaggatccggaaaccaagagcattg
ctaaacgtgaattcagatactttgcacgtcaaattgaaggctatagaaggtctctgaaga
agcgaatcaactcgatgaaaaatgaaacaatcagaagcgacgatattccagagctccgag
agtttccaacattctctgatgaatttgtgaaagcttataaagacacgttgaaaaaagatg
ctccacttatctgtgctccactgctcaaacttccagagacaattaaatcagatgaacttg
acgataaggaatgcctagtttgtctggaagatatggttaagaatcaggataccgtgaagt
gctcgacatgtaaacgccaatatcacaccacttgtgttcaaaaatggttcaaaatcaagc
gaatttgtccaacttgtaatgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGTTCCATAACCAACAATACTCA 144 145 2279 Antisense
GAAACGTCACAGGATCCGGAAACCA 325 357 2425 Antisense
GAATTCAGATACTTTGCACGTCAAA 298 325 2467 Antisense
GAAGCGACGATATTCCAGAGCTCCG 541 343 2552 Antisense
GCTCCGAGAGTTTCCAACATTCTCT 230 299 2571 Antisense
AAAGATGCTCCACTTATCTGTGCTC 232 123 2632 Antisense
CTCCACTGCTCAAACTTCCAGAGAC 160 237 2654 Antisense
GGAATGCCTAGTTTGTCTGGAAGAT 225 533 2706 Antisense
GGATACCGTGAAGTGCTCGACATGT 158 511 2745 Antisense
TAAACGCCAATATCACACCACTTGT 683 639 2769 Antisense
GCGAATTTGTCCAACTTGTAATGCG 264 289 2817 Antisense
Sequence Source Affymetrix Proprietary Database