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[180679_at]

Description T06E6.10 /REP_DB=WormBase Gene ID /WP=CE13331 /TR=O45764 /GB=CAB03319.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 53      6grp_total > 62      4grp_total > 59      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 682
1 2 3 4 range
A 535.9
(0.5)
P 		667.2
(1.6)
P 		820.4
(3)
P 		150.1
(-3)
P 		670
B 461.9
(0.4)
P 		640.2
(2.3)
P 		702.4
(3)
P 		138.9
(-3)
P 		564
C 568.6
(1.6)
P 		672.5
(2.7)
P 		698.7
(3)
P 		158.4
(-3)
P 		540
avr 522.1
(0.8) 		660
(2.2) 		740.5
(3) 		149.1
(-3) 		591

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 635
1 2 3 4 5 6 range
A 396
(-3)
P 		675.8
(-0.2)
P 		961.7
(2.7)
P 		991.6
(3)
P 		723.2
(0.3)
P 		464.1
(-2.3)
P 		596
B 475.4
(-2)
P 		708.5
(0.2)
P 		1001.8
(3)
P 		859.1
(1.7)
P 		831.3
(1.4)
P 		366.7
(-3)
P 		635
C 472.4
(-2.5)
P 		709.8
(0.2)
P 		958.9
(3)
P 		902.6
(2.4)
P 		681.1
(-0.2)
P 		431.2
(-3)
P 		528
avr 447.9
(-2.7) 		698
(0) 		974.1
(3) 		917.8
(2.4) 		745.2
(0.5) 		420.7
(-3) 		553
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 195.1
(2.4)
P 		144.8
(0.8)
P 		214.5
(3)
P 		22
(-3)
P 		193
B 147.3
(2.3)
P 		158.1
(2.8)
P 		162.8
(3)
P 		29.6
(-3)
P 		133
C 188.2
(1.5)
P 		193.3
(1.6)
P 		243.5
(3)
P 		26.7
(-3)
P 		217
avr 176.9
(2) 		165.4
(1.6) 		206.9
(3) 		26.1
(-3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 73
(-3)
P 		240.3
(2.6)
P 		209.4
(1.6)
P 		251.5
(3)
P 		218.2
(1.9)
P 		113
(-1.7)
P 		179
B 165.4
(-2.1)
P 		235.8
(-0)
P 		243.3
(0.2)
P 		227.5
(-0.3)
P 		337.8
(3)
P 		136.7
(-3)
P 		201
C 175.1
(-1.2)
P 		216.6
(1.3)
P 		244.1
(3)
P 		181.5
(-0.8)
P 		220.4
(1.6)
P 		144.4
(-3)
P 		100
avr 137.8
(-2.7) 		230.9
(1.7) 		232.3
(1.8) 		220.2
(1.2) 		258.8
(3) 		131.4
(-3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180679_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13432
Sequence Type Exemplar sequence
Representative Public ID T06E6.10 NCBI
Target Description T06E6.10 /REP_DB=WormBase Gene ID /WP=CE13331 /TR=O45764 /GB=CAB03319.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074434(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074434 NCBI Caenorhabditis elegans T06E6.10 (T06E6.10) mRNA, complete cds. 11/11 None
SNAP00000027747 ENSEMBL cdna:SNAP chromosome:CEL140:V:15420740:15421919:1 11/11 None
GENEFINDER00000027751 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15416733:15421919:1 11/11 None
T06E6.10 ENSEMBL cdna:known chromosome:CEL140:V:15420740:15421919:1 gene:T06E6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15420739-15421919(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06E6.10
Entrez Gene 188189 Entrez gene
SwissProt O45764 EMBL-EBI
WormBase CE13331 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03319 Hypothetical protein T06E6.10 [Caenorhabditis elegans] ref|NP_506835.1| T06E6.10 [Caenorhabditis elegans] 1.0E-150
blast CAB03319 Hypothetical protein T06E6.10 [Caenorhabditis elegans] ref|NP_506835.1| T06E6.10 [Caenorhabditis elegans] 1.0E-149
blast CAB03318 Hypothetical protein T06E6.9 [Caenorhabditis elegans] ref|NP_506834.1| Serpentine Receptor, class H family member (srh-265) [Caenorhabditis elegans] 1.0E-131
blast CAB03317 Hypothetical protein T06E6.8 [Caenorhabditis elegans] ref|NP_506833.2| Serpentine Receptor, class H family member (srh-264) [Caenorhabditis elegans] 1.0E-108
blast CAB54472 Hypothetical protein Y69H2.3a [Caenorhabditis elegans] ref|NP_507643.2| Y69H2.3a [Caenorhabditis elegans] 4.0E-81
blast CAD56617 Hypothetical protein Y69H2.3d [Caenorhabditis elegans] ref|NP_507645.2| Y69H2.3d [Caenorhabditis elegans] 4.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 4.2E-20
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 4.2E-20
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.4E-93
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.3E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027751 10 10-32,52-74,94-112,133-150,273-295,316-338,375-397,423-445,460-479,506-528
Sequence
Target Sequence 
>C. ELEGANS:180679_AT
gtgagccaggaccagagtgcttggaaaagaatgattgcaataccaaaagctgtgctccaa
cagaggaatgtgtattggtccaagtaacctgtattatggcgccatgctacccaatcgctg
aatgtcgtccgaaaaaaacacaaatccgcaagcgtcgtcaagtgggaacaagttgtaaag
atgttcgatgtgacacgccagccggatgtgcgatggttaggccaagtggatgtatggatt
cgcctacaatgaccggatgcgagcttaaaccgacttgtattcatgtaaatgcttgtacaa
ccacaaaatgttcacccggcaagaagtgtgctcttcacactgttcaatgctttaccacac
cctgtgacccagtagcaaaatgcgagactccacttaactttttatcggagccattcaatc
caggatgcggtccgaatgagcattttgttgggtgcaaaaatatttgctctgacaccaagt
gcaatgaaaaacggaaaatgtgcccagcggtgtgcacttttcccggatgcgtctgtctga
atgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGCCAGGACCAGAGTGCTTGGA 353 483 140 Antisense
GTAACCTGTATTATGGCGCCATGCT 129 463 223 Antisense
CTACCCAATCGCTGAATGTCGTCCG 658 223 246 Antisense
AATCCGCAAGCGTCGTCAAGTGGGA 205 167 282 Antisense
AGATGTTCGATGTGACACGCCAGCC 456 67 318 Antisense
GATTCGCCTACAATGACCGGATGCG 18 433 376 Antisense
GGATGCGAGCTTAAACCGACTTGTA 259 513 394 Antisense
GTGCTCTTCACACTGTTCAATGCTT 542 479 467 Antisense
GCGAGACTCCACTTAACTTTTTATC 229 289 521 Antisense
CGGAGCCATTCAATCCAGGATGCGG 472 243 545 Antisense
TCCCGGATGCGTCTGTCTGAATGGA 5 597 660 Antisense
Sequence Source Affymetrix Proprietary Database