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[180678_at]

Description F08G12.8 /REP_DB=WormBase Gene ID /WP=CE03172 /TR=Q19216 /GB=CAA91459.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 04      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 50      6grp_total > 15      4grp_total > 23      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 562
1 2 3 4 range
A 749.4
(3)
P 		346.6
(-1.5)
P 		217.1
(-3)
P 		621.8
(1.6)
P 		532
B 779.4
(3)
P 		339.5
(-1.8)
P 		230.9
(-3)
P 		689.8
(2)
P 		549
C 656.7
(3)
P 		352.1
(-2.3)
P 		308.9
(-3)
P 		572.4
(1.5)
P 		348
avr 728.5
(3) 		346.1
(-1.8) 		252.3
(-3) 		628
(1.7) 		476

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 440
1 2 3 4 5 6 range
A 566
(2.6)
P 		545.1
(2.1)
P 		581.9
(3)
P 		396.8
(-1.6)
P 		477.6
(0.4)
P 		341.5
(-3)
P 		240
B 698.7
(2.8)
P 		707.9
(3)
P 		478.8
(-1.2)
P 		379.3
(-3)
P 		472.5
(-1.3)
P 		401.6
(-2.6)
P 		329
C 746.8
(3)
P 		613.2
(1.2)
P 		428.9
(-1.3)
P 		423
(-1.4)
P 		306.8
(-3)
P 		412.8
(-1.6)
P 		440
avr 670.5
(3) 		622.1
(2) 		496.5
(-0.7) 		399.7
(-2.7) 		419
(-2.3) 		385.3
(-3) 		285
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 272.9
(3)
P 		75.2
(-2.5)
P 		56.8
(-3)
P 		91
(-2.1)
P 		216
B 248.5
(3)
P 		83.8
(-2.1)
P 		53.5
(-3)
P 		147
(-0.1)
P 		195
C 217.4
(3)
P 		101.2
(-2.8)
P 		107.7
(-2.4)
P 		96.5
(-3)
P 		121
avr 246.3
(3) 		86.7
(-2.5) 		72.7
(-3) 		111.5
(-1.7) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 104.3
(-1.9)
P 		193.9
(3)
P 		126.7
(-0.6)
P 		100.6
(-2.1)
P 		144.1
(0.3)
P 		83.2
(-3)
P 		111
B 243.1
(3)
P 		235.6
(2.7)
P 		116.3
(-2.3)
P 		100.5
(-3)
P 		192
(0.8)
P 		149.8
(-0.9)
P 		143
C 276.8
(3)
P 		187.1
(0.2)
P 		109.2
(-2.2)
P 		85.1
(-3)
P 		99.3
(-2.6)
P 		138.2
(-1.3)
P 		192
avr 208.1
(3) 		205.5
(2.9) 		117.4
(-1.8) 		95.4
(-3) 		145.1
(-0.4) 		123.7
(-1.5) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180678_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16201
Sequence Type Exemplar sequence
Representative Public ID F08G12.8 NCBI
Target Description F08G12.8 /REP_DB=WormBase Gene ID /WP=CE03172 /TR=Q19216 /GB=CAA91459.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077491(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077491 NCBI Caenorhabditis elegans F08G12.8 (F08G12.8) mRNA, complete cds. 11/11 None
F08G12.8 ENSEMBL cdna:known chromosome:CEL140:X:11316956:11317970:1 gene:F08G12.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008618 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11316955-11317869(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08G12.8
Entrez Gene 184213 Entrez gene
SwissProt Q19216 EMBL-EBI
WormBase CE03172 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91459 Hypothetical protein F08G12.8 [Caenorhabditis elegans] ref|NP_509892.1| F08G12.8 [Caenorhabditis elegans] 5.0E-55
blast CAE70660 Hypothetical protein CBG17367 [Caenorhabditis briggsae] 1.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509892.1 1 39-61
F08G12.8 1 39-61
Sequence
Target Sequence 
>C. ELEGANS:180678_AT
tcaaagatttcatttcttcctcccaccacaaatttgtattttaggtttggtcaaggtctt
ccaatgtgtgagttcaaacgtcaagatgcgcttcatactcggacttcttatcgcgattgt
tgcttttgttgcaagctccccaatccacggaatctggaacaatctaccagctcctccaca
aaaacgtgtctatggattctacaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAGATTTCATTTCTTCCTCCCA 301 629 36 Antisense
TTCCTCCCACCACAAATTTGTATTT 438 697 52 Antisense
AAGGTCTTCCAATGTGTGAGTTCAA 312 159 88 Antisense
GAGTTCAAACGTCAAGATGCGCTTC 145 399 105 Antisense
CAAGATGCGCTTCATACTCGGACTT 333 185 117 Antisense
GGACTTCTTATCGCGATTGTTGCTT 552 525 136 Antisense
TTGTTGCTTTTGTTGCAAGCTCCCC 322 705 152 Antisense
CTCCCCAATCCACGGAATCTGGAAC 497 233 171 Antisense
TCTGGAACAATCTACCAGCTCCTCC 664 607 188 Antisense
CCAGCTCCTCCACAAAAACGTGTCT 240 273 202 Antisense
AAACGTGTCTATGGATTCTACAACT 268 125 217 Antisense
Sequence Source Affymetrix Proprietary Database