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[180677_s_at]

Description ZK813.1 /REP_DB=WormBase Gene ID /WP=CE05110 /TR=Q23606 /GB=AAB52654.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 7.3
(-3)
A 		45.5
(-1.6)
A 		47.1
(-1.6)
A 		172.4
(3)
A 		165
B 29.6
(-1.4)
A 		9.8
(-3)
A 		59.1
(1.1)
A 		81.8
(3)
A 		72
C 6.6
(-3)
A 		34.6
(-1.1)
A 		11
(-2.7)
A 		97.4
(3)
A 		91
avr 14.5
(-3) 		30
(-2.1) 		39.1
(-1.6) 		117.2
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4264
1 2 3 4 5 6 range
A 7.1
(-3)
A 		9.7
(-3)
A 		55.6
(-2.9)
A 		59.5
(-2.9)
A 		3102.7
(2.3)
P 		3522.3
(3)
P 		3515
B 49.4
(-2.9)
A 		4.6
(-3)
A 		42.5
(-2.9)
A 		6.3
(-3)
A 		3438.5
(2.4)
P 		3791.9
(3)
P 		3787
C 34.3
(-3)
A 		80.2
(-2.9)
A 		4.2
(-3)
A 		35.6
(-3)
A 		4268.5
(3)
P 		2943.7
(1.1)
P 		4264
avr 30.3
(-3) 		31.5
(-3) 		34.1
(-3) 		33.8
(-3) 		3603.2
(3) 		3419.3
(2.7) 		3573
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 2.7
(-3)
A 		9.9
(-1.1)
A 		12.3
(-0.4)
A 		25.2
(3)
A 		23
B 9.4
(-0.2)
A 		2.4
(-3)
A 		13.7
(1.5)
A 		17.4
(3)
A 		15
C 2.2
(-3)
A 		9.9
(0.3)
A 		3.8
(-2.3)
A 		16.4
(3)
A 		14
avr 4.8
(-3) 		7.4
(-2) 		9.9
(-0.9) 		19.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1413
1 2 3 4 5 6 range
A 1.3
(-3)
A 		3.5
(-3)
A 		12.1
(-2.9)
A 		15.1
(-2.9)
A 		936.3
(3)
P 		857.6
(2.5)
P 		935
B 17.2
(-2.9)
A 		1.5
(-3)
A 		10.3
(-3)
A 		1.7
(-3)
A 		1397
(2.9)
P 		1414
(3)
P 		1413
C 12.7
(-2.9)
A 		24.5
(-2.9)
A 		1.1
(-3)
A 		7.2
(-3)
A 		1381.2
(3)
P 		985.4
(1.3)
P 		1380
avr 10.4
(-3) 		9.8
(-3) 		7.8
(-3) 		8
(-3) 		1238.2
(3) 		1085.7
(2.3) 		1230
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180677_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18184
Sequence Type Exemplar sequence
Representative Public ID ZK813.1 NCBI
Target Description ZK813.1 /REP_DB=WormBase Gene ID /WP=CE05110 /TR=Q23606 /GB=AAB52654.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076194(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076194 NCBI Caenorhabditis elegans ZK813.1 (ZK813.1) mRNA, complete cds. 11/11 A 
SNAP00000039694 ENSEMBL cdna:SNAP chromosome:CEL140:X:3446307:3448322:1 9/11 None
GENEFINDER00000039699 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3446307:3446796:1 11/11 None
ZK813.1.2 ENSEMBL cdna:known chromosome:CEL140:X:3446299:3447151:1 gene:ZK813.1 11/11 A 
ZK813.1.1 ENSEMBL cdna:known chromosome:CEL140:X:3446299:3446922:1 gene:ZK813.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3446307-3446949(+) 93.09 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK813.1
Entrez Gene 180636 Entrez gene
SwissProt Q23606 EMBL-EBI
WormBase CE33752 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52654 Hypothetical protein ZK813.1 [Caenorhabditis elegans] ref|NP_508595.2| ZK813.1 [Caenorhabditis elegans] 1.0E-33
blast AAB52654 Hypothetical protein ZK813.1 [Caenorhabditis elegans] ref|NP_508595.2| ZK813.1 [Caenorhabditis elegans] 3.0E-28
blast CAE68431 Hypothetical protein CBG14212 [Caenorhabditis briggsae] 6.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR005649 EMBL-EBI Chorion family 2 1.6E-62
Sequence
Target Sequence 
>C. ELEGANS:180677_S_AT
tctacaagccacgcaagcatcacagaagacgccacggacgtcgtggaagacacggaagac
atggaagacatggaagaagacatagtgattcatccgattctagctctgaatcaagatcca
gatcatcgtcgggatccagttcatccgagtcacgcagctacgagagagattactactacg
tcccaagatggccaaccgccccaagttacggaaacaccggtaacgatgttccagctggaa
cagcttacggatcaccagccaacgatccaccagcacctgctccatacggtaccaacacat
ttggcggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACAAGCCACGCAAGCATCACAG 668 613 137 Antisense
AGTGATTCATCCGATTCTAGCTCTG 607 59 220 Antisense
ATTCTAGCTCTGAATCAAGATCCAG 221 11 233 Antisense
TCATCCGAGTCACGCAGCTACGAGA 15 623 277 Antisense
GAGTCACGCAGCTACGAGAGAGATT 529 399 283 Antisense
GAGAGAGATTACTACTACGTCCCAA 140 391 298 Antisense
ACTACTACGTCCCAAGATGGCCAAC 454 99 308 Antisense
ACACCGGTAACGATGTTCCAGCTGG 680 107 350 Antisense
TGGAACAGCTTACGGATCACCAGCC 468 547 372 Antisense
TGCTCCATACGGTACCAACACATTT 299 581 414 Antisense
TACGGTACCAACACATTTGGCGGAA 178 647 421 Antisense
Sequence Source Affymetrix Proprietary Database