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[180676_at]

Description ZK813.1 /REP_DB=WormBase Gene ID /WP=CE05110 /TR=Q23606 /GB=AAB52654.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 31.4
(-3)
A 		53.3
(-1.4)
A 		70.8
(-0.1)
P 		111.9
(3)
P 		81
B 28.3
(-3)
A 		67.4
(3)
A 		45.9
(-0.3)
P 		62.9
(2.3)
A 		39
C 46.8
(-3)
A 		49.8
(-2.5)
A 		48.8
(-2.7)
A 		83.3
(3)
P 		37
avr 35.5
(-3) 		56.8
(-0.5) 		55.2
(-0.7) 		86
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1176
1 2 3 4 5 6 range
A 55.7
(-2.9)
A 		36.1
(-3)
A 		55.7
(-2.9)
P 		62.6
(-2.9)
P 		1096.8
(3)
P 		1069.2
(2.8)
P 		1061
B 36.9
(-3)
A 		41.3
(-3)
A 		56.3
(-2.9)
P 		48.5
(-2.9)
A 		1178
(3)
P 		1109.6
(2.6)
P 		1141
C 42.8
(-3)
P 		34
(-3)
A 		37.4
(-3)
A 		33.4
(-3)
A 		1209.4
(3)
P 		1182.1
(2.9)
P 		1176
avr 45.1
(-3) 		37.1
(-3) 		49.8
(-2.9) 		48.2
(-2.9) 		1161.4
(3) 		1120.3
(2.8) 		1124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 11.4
(-3)
A 		11.6
(-2.8)
A 		18.5
(3)
P 		16.4
(1.2)
P 		7
B 9
(-3)
A 		16.6
(3)
A 		10.6
(-1.7)
P 		13.4
(0.5)
A 		8
C 15.5
(0)
A 		14.3
(-2.4)
A 		17
(3)
A 		14
(-3)
P 		3
avr 12
(-3) 		14.2
(0.9) 		15.4
(3) 		14.6
(1.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 472
1 2 3 4 5 6 range
A 10.3
(-3)
A 		12.8
(-3)
A 		12.1
(-3)
P 		15.9
(-2.9)
P 		331
(3)
P 		260.3
(1.7)
P 		321
B 12.8
(-3)
A 		13.7
(-3)
A 		13.7
(-3)
P 		12.8
(-3)
A 		478.6
(3)
P 		413.8
(2.2)
P 		466
C 15.8
(-2.9)
P 		10.4
(-2.9)
A 		9.5
(-3)
A 		6.7
(-3)
A 		391.3
(2.9)
P 		395.7
(3)
P 		389
avr 13
(-3) 		12.3
(-3) 		11.8
(-3) 		11.8
(-3) 		400.3
(3) 		356.6
(2.3) 		389
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180676_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18184
Sequence Type Exemplar sequence
Representative Public ID ZK813.1 NCBI
Target Description ZK813.1 /REP_DB=WormBase Gene ID /WP=CE05110 /TR=Q23606 /GB=AAB52654.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076194(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076194 NCBI Caenorhabditis elegans ZK813.1 (ZK813.1) mRNA, complete cds. 11/11 A 
SNAP00000039694 ENSEMBL cdna:SNAP chromosome:CEL140:X:3446307:3448322:1 11/11 None
GENEFINDER00000039699 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3446307:3446796:1 11/11 None
ZK813.1.2 ENSEMBL cdna:known chromosome:CEL140:X:3446299:3447151:1 gene:ZK813.1 11/11 A 
ZK813.1.1 ENSEMBL cdna:known chromosome:CEL140:X:3446299:3446922:1 gene:ZK813.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3446307-3446949(+) 93.09 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK813.1
Entrez Gene 180636 Entrez gene
SwissProt Q23606 EMBL-EBI
WormBase CE33752 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52654 Hypothetical protein ZK813.1 [Caenorhabditis elegans] ref|NP_508595.2| ZK813.1 [Caenorhabditis elegans] 1.0E-33
blast AAB52654 Hypothetical protein ZK813.1 [Caenorhabditis elegans] ref|NP_508595.2| ZK813.1 [Caenorhabditis elegans] 3.0E-28
blast CAE68431 Hypothetical protein CBG14212 [Caenorhabditis briggsae] 6.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR005649 EMBL-EBI Chorion family 2 1.6E-62
Sequence
Target Sequence 
>C. ELEGANS:180676_AT
tcgctctcatcgctgttgttgtagcctccagctacggagctcaaaacgactacccaacag
atgttggatatggaaaccctggctatgacaacggaaatcccttctacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTCTCATCGCTGTTGTTGTAGC 595 599 35 Antisense
TCTCATCGCTGTTGTTGTAGCCTCC 54 609 39 Antisense
TCGCTGTTGTTGTAGCCTCCAGCTA 121 599 44 Antisense
TGTAGCCTCCAGCTACGGAGCTCAA 625 559 54 Antisense
GCTACGGAGCTCAAAACGACTACCC 248 303 65 Antisense
CGGAGCTCAAAACGACTACCCAACA 686 241 69 Antisense
CAAAACGACTACCCAACAGATGTTG 200 191 76 Antisense
GATGTTGGATATGGAAACCCTGGCT 409 409 94 Antisense
GGATATGGAAACCCTGGCTATGACA 705 509 100 Antisense
GAAACCCTGGCTATGACAACGGAAA 77 357 107 Antisense
TGACAACGGAAATCCCTTCTACAAG 657 571 120 Antisense
Sequence Source Affymetrix Proprietary Database