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[180675_at]

Description F46H5.2 /REP_DB=WormBase Gene ID /WP=CE04588 /TR=Q20490 /GB=AAB37021.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 46      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 335
1 2 3 4 range
A 325.8
(3)
P 		158.6
(-2.9)
A 		154.9
(-3)
A 		198.8
(-1.5)
A 		171
B 405.6
(3)
P 		212.7
(-1.2)
A 		169.6
(-2.2)
A 		131.6
(-3)
A 		274
C 466.2
(3)
P 		262.3
(-1.4)
A 		185
(-3)
A 		205.9
(-2.6)
A 		281
avr 399.2
(3) 		211.2
(-1.9) 		169.8
(-3) 		178.8
(-2.8) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 120.2
(-1.3)
A 		200.1
(3)
P 		139.8
(-0.2)
A 		135.1
(-0.5)
P 		87.8
(-3)
M 		147
(0.2)
A 		112
B 229.2
(3)
A 		120.6
(-2.9)
A 		168.1
(-0.3)
A 		139.9
(-1.9)
A 		144.8
(-1.6)
A 		119.4
(-3)
P 		110
C 197.5
(3)
P 		161.6
(1.4)
M 		150.5
(0.9)
A 		65.3
(-3)
A 		153.6
(1)
A 		113.5
(-0.8)
A 		132
avr 182.3
(3) 		160.8
(1.1) 		152.8
(0.4) 		113.4
(-3) 		128.7
(-1.7) 		126.6
(-1.9) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 118.6
(3)
P 		34.4
(-2.6)
A 		40.5
(-2.2)
A 		29.1
(-3)
A 		90
B 129.4
(3)
P 		52.5
(-1.6)
A 		39.3
(-2.3)
A 		28
(-3)
A 		101
C 154.3
(3)
P 		75.4
(-1)
A 		64.5
(-1.5)
A 		34.7
(-3)
A 		120
avr 134.1
(3) 		54.1
(-1.6) 		48.1
(-2) 		30.6
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 22.2
(-3)
A 		71.2
(3)
P 		30.4
(-2)
A 		34.3
(-1.5)
P 		26.5
(-2.5)
M 		35.8
(-1.3)
A 		49
B 79.7
(3)
A 		40.1
(-2.6)
A 		40.8
(-2.5)
A 		37.1
(-3)
A 		58.8
(0.1)
A 		44.5
(-2)
P 		43
C 73.2
(3)
P 		49.3
(0.6)
M 		38.3
(-0.5)
A 		13.1
(-3)
A 		49.7
(0.7)
A 		38
(-0.5)
A 		60
avr 58.4
(3) 		53.5
(2) 		36.5
(-1.4) 		28.2
(-3) 		45
(0.3) 		39.4
(-0.8) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180675_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17121
Sequence Type Exemplar sequence
Representative Public ID F46H5.2 NCBI
Target Description F46H5.2 /REP_DB=WormBase Gene ID /WP=CE04588 /TR=Q20490 /GB=AAB37021.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029503(10), NM_001029505(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029503 NCBI Caenorhabditis elegans F46H5.2a (F46H5.2) mRNA, complete cds. 10/11 None
NM_001029505 NCBI Caenorhabditis elegans F46H5.2c (F46H5.2) mRNA, complete cds. 10/11 None
SNAP00000013757 ENSEMBL cdna:SNAP chromosome:CEL140:X:7265611:7267354:1 10/11 None
GENEFINDER00000013760 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7265611:7267354:1 10/11 None
F46H5.2c ENSEMBL cdna:known chromosome:CEL140:X:7265600:7267828:1 gene:F46H5.2 10/11 A 
F46H5.2a ENSEMBL cdna:known chromosome:CEL140:X:7265611:7267831:1 gene:F46H5.2 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029504 3/11 Cross Hyb Matching Probes None
F46H5.2b 3/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180989 3 2 NM_001029503 174193_at (11), 180632_at (11), 180675_at (10)
NM_001029504 180632_at (11)
NM_001029505 174193_at (11), 180675_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7265043-7266341(+) 99.71 99.71
Public Domain and Genome References
Ensembl F46H5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37021 Hypothetical protein F46H5.2a [Caenorhabditis elegans] ref|NP_001024674.1| F46H5.2a [Caenorhabditis elegans] 0.0
blast AAP40530 Hypothetical protein F46H5.2b [Caenorhabditis elegans] ref|NP_001024675.1| F46H5.2b [Caenorhabditis elegans] 0.0
blast AAP40531 Hypothetical protein F46H5.2c [Caenorhabditis elegans] ref|NP_001024676.1| F46H5.2c [Caenorhabditis elegans] 1.0E-171
Sequence
Target Sequence 
>C. ELEGANS:180675_AT
caagtgcttcaaactcgtcttgcccatcaacaggatcgaactctaactcgaacaattcca
acgcaaatgctaaacttggagcaacattcaatcatggagaggacataccgccagcctctt
caccagcaacttcaatatcttcagtaattagcgaacaatctgaagcattccgcaattctc
cttaccatgcacaatctccactgagcgcagttctcttccagagaccagactttctttcaa
gtgaaggtgaccgtccgatgtcatatccttcaatgtcatcattctctacaaatgttccgg
attctgagaattccagccgaagcagcgtggatggatacaatttgaaggatactacttcag
aaaagataaaacagtttcgtgagaacaataaaaggaaaacaagtaattcttcaagtgaag
aagagcctgaaactgaagaaggagatccaagtagaaaattgagttcgaaaagcgcagagg
acaaatttgtcggccgaggaatagacgcaccaagaggaagaattgccaacattcgtcgcg
aaagtagctgctctgtggacagcgacgtcgcacgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTGCTTCAAACTCGTCTTGCCC 57 185 86 Antisense
GTCTTGCCCATCAACAGGATCGAAC 257 469 102 Antisense
CCTCTTCACCAGCAACTTCAATATC 265 267 200 Antisense
ATCTGAAGCATTCCGCAATTCTCCT 342 33 243 Antisense
TTACCATGCACAATCTCCACTGAGC 49 681 267 Antisense
CTTCCAGAGACCAGACTTTCTTTCA 330 219 300 Antisense
AGGTGACCGTCCGATGTCATATCCT 440 57 330 Antisense
GTCATATCCTTCAATGTCATCATTC 41 469 345 Antisense
GAAGAATTGCCAACATTCGTCGCGA 201 341 602 Antisense
TTCGTCGCGAAAGTAGCTGCTCTGT 115 695 617 Antisense
CTGTGGACAGCGACGTCGCACGAGC 296 241 638 Antisense
Sequence Source Affymetrix Proprietary Database