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[180674_at] 7TM chemoreceptor, srt family

Description C03A7.9 /REP_DB=WormBase Gene ID /WP=CE07867 /TR=O16504 /GB=AAB66003.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 27      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 31.9
(-1.2)
A 		65.1
(2)
A 		13.3
(-3)
A 		75.7
(3)
A 		62
B 40.3
(-1.7)
A 		54.7
(2.4)
A 		56.9
(3)
A 		35.8
(-3)
A 		21
C 37.9
(-2.3)
A 		59.4
(-0)
A 		30.6
(-3)
A 		89.1
(3)
P 		59
avr 36.7
(-2.4) 		59.7
(1.7) 		33.6
(-3) 		66.9
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 49.6
(2.3)
A 		28.5
(-1.2)
A 		54.1
(3)
P 		40.2
(0.7)
A 		20.7
(-2.5)
A 		17.6
(-3)
A 		37
B 13.4
(-3)
A 		52.8
(2.8)
A 		54.5
(3)
A 		27.3
(-1)
A 		26.5
(-1.1)
A 		34.5
(0.1)
A 		41
C 12.5
(-1.9)
A 		51.6
(3)
P 		23.5
(-0.5)
A 		6.8
(-2.6)
A 		20
(-1)
A 		4
(-3)
A 		48
avr 25.2
(-1.5) 		44.3
(3) 		44
(2.9) 		24.8
(-1.6) 		22.4
(-2.1) 		18.7
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.6
(1.6)
A 		14.1
(3)
A 		3.5
(-3)
A 		11.1
(1.3)
A 		11
B 12.9
(2.4)
A 		13.5
(3)
A 		13.2
(2.7)
A 		7.6
(-3)
A 		6
C 12.5
(-1.3)
A 		17.1
(3)
A 		10.7
(-3)
A 		15
(1)
P 		6
avr 12.3
(0.3) 		14.9
(3) 		9.1
(-3) 		11.2
(-0.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.2
(0.9)
A 		10.1
(1.6)
A 		11.8
(3)
P 		10.2
(1.7)
A 		6.3
(-1.4)
A 		4.3
(-3)
A 		8
B 4.7
(-3)
A 		17.6
(3)
A 		13.2
(1)
A 		7.2
(-1.8)
A 		10.8
(-0.2)
A 		12.9
(0.8)
A 		13
C 4.6
(-1.6)
A 		15.7
(3)
P 		6
(-1)
A 		1.4
(-3)
A 		6.5
(-0.8)
A 		1.3
(-3)
A 		14
avr 6.2
(-3) 		14.5
(3) 		10.3
(-0) 		6.3
(-2.9) 		7.9
(-1.8) 		6.2
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180674_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15461
Sequence Type Exemplar sequence
Representative Public ID C03A7.9 NCBI
Target Description C03A7.9 /REP_DB=WormBase Gene ID /WP=CE07867 /TR=O16504 /GB=AAB66003.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071985(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071985 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-64) (srt-64) mRNA, complete cds. 9/11 None
SNAP00000035281 ENSEMBL cdna:SNAP chromosome:CEL140:V:5168195:5169484:-1 9/11 None
GENEFINDER00000035300 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5168195:5169484:-1 9/11 None
C03A7.9 ENSEMBL cdna:known chromosome:CEL140:V:5168195:5169484:-1 gene:C03A7.9 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5167551-5169484(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-64
Ensembl C03A7.9
Entrez Gene 182140 Entrez gene
SwissProt O16504 EMBL-EBI
WormBase CE37951 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66003 Serpentine receptor, class t protein 64 [Caenorhabditis elegans] ref|NP_504386.2| Serpentine Receptor, class T family member (srt-64) [Caenorhabditis elegans] 1.0E-159
blast CAE64087 Hypothetical protein CBG08692 [Caenorhabditis briggsae] 1.0E-126
blast NP_503894 Serpentine Receptor, class T family member (srt-63) [Caenorhabditis elegans] gb|AAC48119.2| Serpentine receptor, class t protein 63 [Caenorhabditis elegans] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.2E-73
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504386.2 7 15-37,57-79,99-121,128-150,176-198,219-241,251-273
C03A7.9 7 15-37,57-79,99-121,128-150,176-198,219-241,251-273
SNAP00000035281 7 15-37,57-79,99-121,128-150,176-198,219-241,251-273
GENEFINDER00000035300 7 15-37,57-79,99-121,128-150,176-198,219-241,251-273
Sequence
Target Sequence 
>C. ELEGANS:180674_AT
acgcttgcactgagcttcatttcgtacattctcatcatttatagtatttacaaaaagcgt
agaatctctcgatcctcatcgtcatcctttcgtacggaagtaggaatccttgttcaggcg
accattctcacgacgtacatggctctactgatcacattttggcacaatgcagaatcctgg
ttcaaaatgaccaactacactctggcatcacttaactgtgtctggattttattttcccat
ctgaacttcatccttcttgtctctacaaacaaaggtgttcggaatcagattctcagacca
ttctgctcaaaaaatcggtctagacaaacgtcgaaacttgttccattgtcgcacggtggc
gcttacctaattatttttctagccgttgaaattggtattgttttgtttattctgactgat
catcaaaaaaccagtcgttcgcacgcgctaaacctattggtctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCTTGCACTGAGCTTCATTTCGT 58 93 568 Antisense
TTCATTTCGTACATTCTCATCATTT 560 689 583 Antisense
AAAAGCGTAGAATCTCTCGATCCTC 570 131 620 Antisense
TCATCGTCATCCTTTCGTACGGAAG 169 619 643 Antisense
AGGAATCCTTGTTCAGGCGACCATT 171 55 669 Antisense
GACGTACATGGCTCTACTGATCACA 545 377 699 Antisense
TGACCAACTACACTCTGGCATCACT 578 569 755 Antisense
TATTTTCCCATCTGAACTTCATCCT 20 663 797 Antisense
GTCGAAACTTGTTCCATTGTCGCAC 108 475 897 Antisense
CAAAAAACCAGTCGTTCGCACGCGC 343 191 991 Antisense
GCACGCGCTAAACCTATTGGTCTCT 51 315 1008 Antisense
Sequence Source Affymetrix Proprietary Database