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[180673_s_at]

Description ZK180.3 /REP_DB=WormBase Gene ID /WP=CE07621 /TR=Q23444 /GB=AAB52967.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 91      6grp_total > 65      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 367
1 2 3 4 range
A 187.4
(-3)
P 		193.7
(-2.9)
P 		239.1
(-2)
P 		502.9
(3)
P 		316
B 162.1
(-3)
P 		185.6
(-2.6)
P 		226
(-2)
P 		528.6
(3)
P 		367
C 215.4
(-1.8)
P 		167.5
(-3)
P 		171.3
(-2.9)
P 		397.6
(3)
P 		230
avr 188.3
(-2.9) 		182.3
(-3) 		212.1
(-2.4) 		476.4
(3) 		294

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 139.9
(-3)
P 		258.3
(0.1)
P 		144.2
(-2.9)
P 		342.5
(2.2)
P 		183.4
(-1.9)
P 		372.5
(3)
P 		233
B 168.8
(-1.5)
P 		146.4
(-3)
P 		191
(0.1)
P 		189.9
(-0)
P 		176.3
(-0.9)
P 		233.8
(3)
P 		87
C 322.3
(0.6)
P 		158.9
(-3)
P 		431.7
(3)
P 		260
(-0.8)
P 		250.7
(-1)
P 		249
(-1)
P 		273
avr 210.3
(-1.6) 		187.9
(-3) 		255.6
(1.2) 		264.1
(1.7) 		203.5
(-2) 		285.1
(3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 68.2
(2)
P 		42.1
(-3)
P 		62.5
(0.9)
P 		73.6
(3)
P 		32
B 51.7
(-2.5)
P 		45.8
(-3)
P 		52.4
(-2.4)
P 		112.6
(3)
P 		67
C 71.3
(3)
P 		48.2
(-3)
P 		59.7
(-0)
P 		67
(1.9)
P 		23
avr 63.7
(-0.2) 		45.4
(-3) 		58.2
(-1) 		84.4
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 25.8
(-3)
P 		91.9
(3)
P 		31.4
(-2.5)
P 		86.9
(2.5)
P 		55.3
(-0.3)
P 		90.7
(2.9)
P 		66
B 58.7
(-1.2)
P 		48.7
(-2.7)
P 		46.4
(-3)
P 		50.3
(-2.4)
P 		71.6
(0.7)
P 		87.2
(3)
P 		41
C 119.5
(3)
P 		48.5
(-3)
P 		109.9
(2.2)
P 		52.3
(-2.7)
P 		81.1
(-0.2)
P 		83.3
(-0.1)
P 		71
avr 68
(-1.7) 		63
(-2.9) 		62.6
(-3) 		63.2
(-2.9) 		69.3
(-1.4) 		87.1
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180673_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10642
Sequence Type Exemplar sequence
Representative Public ID ZK180.3 NCBI
Target Description ZK180.3 /REP_DB=WormBase Gene ID /WP=CE07621 /TR=Q23444 /GB=AAB52967.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028439(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028439 NCBI Caenorhabditis elegans ZK180.3a (ZK180.3) mRNA, complete cds. 11/11 None
SNAP00000005944 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4505338:4511169:-1 10/11 None
GENEFINDER00000005957 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4508613:4511293:-1 11/11 None
ZK180.3a ENSEMBL cdna:known chromosome:CEL140:IV:4508523:4511302:-1 gene:ZK180.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028440 5/11 Cross Hyb Matching Probes None
ZK180.3b.2 5/11 Cross Hyb Matching Probes None
ZK180.3b.1 5/11 Cross Hyb Matching Probes None
ZK180.3b.3 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177216 2 1 NM_001028439 180673_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4508618-4511299(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK180.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52967 Hypothetical protein ZK180.3a [Caenorhabditis elegans] ref|NP_001023610.1| ZK180.3a [Caenorhabditis elegans] 0.0
blast CAE58541 Hypothetical protein CBG01700 [Caenorhabditis briggsae] 0.0
blast AAP31419 Hypothetical protein ZK180.3b [Caenorhabditis elegans] ref|NP_001023611.1| ZK180.3b [Caenorhabditis elegans] 1.0E-149
Protein Domains
Database ID Description E-Value
Pfam IPR007594 EMBL-EBI Rft protein 1.0E-126
Pfam IPR007594 EMBL-EBI Rft protein 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023610.1 10 36-55,76-98,108-130,143-165,175-197,322-344,359-381,394-416,454-476,483-500
ZK180.3a 10 36-55,76-98,108-130,143-165,175-197,322-344,359-381,394-416,454-476,483-500
SNAP00000005944 8 51-73,83-105,118-140,150-172,297-319,334-356,369-391,450-472
GENEFINDER00000005957 10 36-55,76-98,108-130,143-165,175-197,322-344,359-381,394-416,454-476,483-500
Sequence
Target Sequence 
>C. ELEGANS:180673_S_AT
ggagtaattggattcgtcgcttgcacattcggaattccgtattcaccagttgtaatttca
ctttatggaggaaaattactttctgaaaatggaggagcacttctactttctctgtactct
ggctatattcttgtgacggcgattaatggaataactgagggattcgcaatggcaagtatg
gataatcgacagattttcactcacggaaaattcctttttgtcacgtcgatcattcatctt
attattaattatgtgctttgtgtgtacatgaattctgcaggatttattgtggcgaatatt
attaacatgtctgttaggattatttataactggcgtaccattcgcgaatatctcggcgat
aaatgtccatccttcacagaagtactcccaactggtcagacatcaatattcctgggagtt
tcactacttgcaacttcctttacatatttgttattcgctacaacacctggcctatcctat
acacttgcccacatcgctatcggagctgtgtgcctgattctcaccgcccaagacactgct
caacatgattccgtcttcactgtgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTAATTGGATTCGTCGCTTGCA 423 517 982 Antisense
GTCGCTTGCACATTCGGAATTCCGT 285 475 997 Antisense
ATGGAGGAGCACTTCTACTTTCTCT 696 51 1070 Antisense
TACTTTCTCTGTACTCTGGCTATAT 702 645 1085 Antisense
AATTCCTTTTTGTCACGTCGATCAT 638 177 1190 Antisense
GCGTACCATTCGCGAATATCTCGGC 295 291 1314 Antisense
GAAGTACTCCCAACTGGTCAGACAT 165 335 1360 Antisense
TTCACTACTTGCAACTTCCTTTACA 650 685 1401 Antisense
TATCGGAGCTGTGTGCCTGATTCTC 285 659 1479 Antisense
GCCCAAGACACTGCTCAACATGATT 658 285 1507 Antisense
AACATGATTCCGTCTTCACTGTGAT 695 137 1523 Antisense
Sequence Source Affymetrix Proprietary Database