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[180672_at]

Description C37C3.7 /REP_DB=WormBase Gene ID /WP=CE06932 /TR=Q22913 /GB=AAC25862.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 14      4grp_high_8_8 > 42      6grp_total > 03      4grp_total > 45      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 211.8
(3)
P 		152.1
(-0.9)
P 		120.4
(-3)
A 		175
(0.6)
M 		91
B 217.8
(3)
P 		186
(0.5)
A 		145.9
(-2.7)
P 		141.8
(-3)
A 		76
C 235.3
(3)
P 		210.1
(1.6)
P 		159.7
(-1.1)
P 		124.1
(-3)
P 		111
avr 221.6
(3) 		182.7
(0.1) 		142
(-3) 		147
(-2.6) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 197.9
(2.2)
M 		215.7
(3)
P 		173.9
(1.1)
P 		205.3
(2.5)
P 		154.4
(0.2)
A 		85.4
(-3)
A 		130
B 196.9
(1.7)
P 		221.7
(3)
P 		156.7
(-0.4)
P 		173.6
(0.5)
M 		167.1
(0.1)
P 		107.7
(-3)
A 		114
C 254.1
(3)
P 		217.9
(1.3)
P 		158.6
(-1.4)
A 		173.6
(-0.7)
M 		168.9
(-0.9)
P 		124
(-3)
P 		130
avr 216.3
(2.9) 		218.4
(3) 		163.1
(0.1) 		184.2
(1.2) 		163.5
(0.1) 		105.7
(-3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 77.1
(3)
P 		33
(-2.1)
P 		31.5
(-2.3)
A 		25.6
(-3)
M 		52
B 69.4
(3)
P 		45.9
(-0.6)
A 		33.8
(-2.4)
P 		30.2
(-3)
A 		39
C 77.9
(3)
P 		60.4
(1.2)
P 		55.7
(0.7)
P 		20.9
(-3)
P 		57
avr 74.8
(3) 		46.4
(-0.5) 		40.3
(-1.2) 		25.6
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 36.5
(-1.3)
M 		76.7
(3)
P 		37.9
(-1.2)
P 		52.1
(0.4)
P 		46.6
(-0.2)
A 		20.8
(-3)
A 		56
B 68.5
(2.1)
P 		73.8
(3)
P 		38.1
(-3)
P 		46
(-1.7)
M 		67.9
(2)
P 		40.2
(-2.6)
A 		36
C 94.2
(3)
P 		66.5
(0.2)
P 		40.4
(-2.4)
A 		34.9
(-3)
M 		54.6
(-1)
P 		41.5
(-2.3)
P 		59
avr 66.4
(2.1) 		72.3
(3) 		38.8
(-2.3) 		44.3
(-1.4) 		56.4
(0.5) 		34.2
(-3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180672_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11539
Sequence Type Exemplar sequence
Representative Public ID C37C3.7 NCBI
Target Description C37C3.7 /REP_DB=WormBase Gene ID /WP=CE06932 /TR=Q22913 /GB=AAC25862.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072618(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072618 NCBI Caenorhabditis elegans C37C3.7 (C37C3.7) mRNA, complete cds. 11/11 None
SNAP00000006073 ENSEMBL cdna:SNAP chromosome:CEL140:V:7837961:7839662:-1 11/11 None
GENEFINDER00000006097 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7837961:7840492:-1 11/11 None
C37C3.7 ENSEMBL cdna:known chromosome:CEL140:V:7837807:7839662:-1 gene:C37C3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7837961-7842114(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C37C3.7
Entrez Gene 183289 Entrez gene
SwissProt Q22913 EMBL-EBI
WormBase CE32822 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84850 Hypothetical protein C37C3.7 [Caenorhabditis elegans] ref|NP_505019.2| C37C3.7 [Caenorhabditis elegans] 0.0
blast T34396 hypothetical protein C37C3.7 - Caenorhabditis elegans 0.0
blast CAE73174 Hypothetical protein CBG20570 [Caenorhabditis briggsae] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 1.7E-57
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505019.2 1 248-270
C37C3.7 1 248-270
SNAP00000006073 1 248-270
GENEFINDER00000006097 1 339-361
Sequence
Target Sequence 
>C. ELEGANS:180672_AT
ttgtctgtgtttacggatccccagatttcaaaaaccgcactctttcgtgtgactgcccag
acaaatacactggacgccgttgtgaacaatgcaaaaaacacggtccactcatcgaaccat
ttcctcattgcgagctcgaccccagcaagaagaagcacatcgaaaaagcagctgagcata
gacaaaaagtaaagaaaggaattagaaatcgacttcgaattattgcaatttgtgtggcgg
ctctatcagttgttgcatttgttgcttttatgggaagatgcatgcacaaaaatgcaacta
ccgcaaaacaactacgaaacatgaaggatactgcagaacggcatcgacttctaacaaatc
atgtgcggcttcaaaaatttgaggaaactgttgctcaagagtgctcagaaaatacagagg
ccgctagaattgaggaacgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTCTGTGTTTACGGATCCCCAGA 7 707 1277 Antisense
GATCCCCAGATTTCAAAAACCGCAC 127 417 1292 Antisense
AAAAACCGCACTCTTTCGTGTGACT 196 129 1306 Antisense
AATACACTGGACGCCGTTGTGAACA 539 165 1340 Antisense
GCAAAAAACACGGTCCACTCATCGA 408 317 1367 Antisense
TCATCGAACCATTTCCTCATTGCGA 560 621 1385 Antisense
GAGCTCGACCCCAGCAAGAAGAAGC 443 385 1408 Antisense
GCAATTTGTGTGGCGGCTCTATCAG 59 323 1501 Antisense
GGCTCTATCAGTTGTTGCATTTGTT 318 539 1515 Antisense
GATACTGCAGAACGGCATCGACTTC 463 423 1603 Antisense
GAGGCCGCTAGAATTGAGGAACGTC 698 405 1693 Antisense
Sequence Source Affymetrix Proprietary Database