[Home] | [Total List]

[180671_at]

Description F42A9.4 /REP_DB=WormBase Gene ID /WP=CE07226 /TR=Q20315 /GB=AAB03161.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 18      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 5.8
(-2.7)
A 		3.5
(-3)
A 		11.2
(-1.9)
A 		45.2
(3)
A 		42
B 4.8
(-2.7)
A 		45.6
(3)
A 		8.3
(-2.2)
A 		2.8
(-3)
A 		43
C 2.1
(-3)
A 		2
(-3)
A 		2.7
(-2.9)
A 		50.2
(3)
A 		48
avr 4.2
(-3) 		17
(-0.3) 		7.4
(-2.3) 		32.7
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 5.9
(-3)
A 		21.9
(-0.8)
A 		48.7
(2.8)
A 		50.5
(3)
A 		20.6
(-1)
A 		13.8
(-1.9)
A 		45
B 19.2
(-1.1)
A 		20.1
(-0.9)
A 		41
(3)
A 		32.9
(1.5)
A 		20.3
(-0.9)
A 		8.8
(-3)
A 		32
C 16.1
(-1.5)
A 		54.5
(3)
A 		6.8
(-2.6)
A 		13.1
(-1.9)
A 		3.4
(-3)
A 		26.3
(-0.3)
A 		51
avr 13.7
(-3) 		32.2
(3) 		32.2
(3) 		32.2
(3) 		14.8
(-2.6) 		16.3
(-2.2) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.1
(-1.7)
A 		0.8
(-3)
A 		2.9
(-0.8)
A 		6.6
(3)
A 		6
B 1.5
(-2.5)
A 		11.3
(3)
A 		1.9
(-2.3)
A 		0.6
(-3)
A 		11
C 0.7
(-2.9)
A 		0.6
(-3)
A 		1
(-2.7)
A 		8.5
(3)
A 		8
avr 1.4
(-3) 		4.2
(1.4) 		1.9
(-2.2) 		5.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.1
(-3)
A 		7.8
(0.4)
A 		10.6
(1.9)
A 		12.8
(3)
A 		6.2
(-0.4)
A 		3.4
(-1.8)
A 		12
B 6.7
(0)
A 		6.7
(0)
A 		10
(3)
A 		8.7
(1.8)
A 		8.3
(1.5)
A 		3.3
(-3)
A 		7
C 6
(-1.1)
A 		16.6
(3)
A 		1.7
(-2.8)
A 		2.6
(-2.4)
A 		1.1
(-3)
A 		8.8
(-0)
A 		16
avr 4.6
(-3) 		10.4
(3) 		7.4
(-0.1) 		8
(0.5) 		5.2
(-2.4) 		5.2
(-2.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180671_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9740
Sequence Type Exemplar sequence
Representative Public ID F42A9.4 NCBI
Target Description F42A9.4 /REP_DB=WormBase Gene ID /WP=CE07226 /TR=Q20315 /GB=AAB03161.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069070(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069070 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-33E3) (cyp-33E3) mRNA, complete cds. 11/11 None
SNAP00000042133 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8615004:8615853:1 11/11 None
GENEFINDER00000042145 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8612562:8615853:1 11/11 None
F42A9.4 ENSEMBL cdna:known chromosome:CEL140:IV:8615004:8615853:1 gene:F42A9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8615009-8615859(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cyp-33E3
Ensembl F42A9.4
Entrez Gene 185652 Entrez gene
SwissProt Q20315 EMBL-EBI
WormBase CE07226 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB03160 Cytochrome p450 family protein 33E2 [Caenorhabditis elegans] ref|NP_501470.1| CYtochrome P450 family member (cyp-33E2) [Caenorhabditis elegans] 0.0
blast AAB03125 Hypothetical protein C49C8.4 [Caenorhabditis elegans] ref|NP_501480.2| CYtochrome P450 family member (cyp-33E1) [Caenorhabditis elegans] 0.0
blast CAE60003 Hypothetical protein CBG03499 [Caenorhabditis briggsae] 0.0
blast AAB03161 Cytochrome p450 family protein 33E3 [Caenorhabditis elegans] ref|NP_501471.1| CYtochrome P450 family member (cyp-33E3) [Caenorhabditis elegans] 1.0E-129
blast AAB03160 Cytochrome p450 family protein 33E2 [Caenorhabditis elegans] ref|NP_501470.1| CYtochrome P450 family member (cyp-33E2) [Caenorhabditis elegans] 7.0E-73
blast AAB03125 Hypothetical protein C49C8.4 [Caenorhabditis elegans] ref|NP_501480.2| CYtochrome P450 family member (cyp-33E1) [Caenorhabditis elegans] 2.0E-72
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 5.1E-26
Pfam IPR001128 EMBL-EBI Cytochrome P450 4.3E-112
Pfam IPR001128 EMBL-EBI Cytochrome P450 5.1E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501471.1 1 2-20
F42A9.4 1 2-20
SNAP00000042133 1 2-20
GENEFINDER00000042145 3 2-20,477-496,535-552
Sequence
Target Sequence 
>C. ELEGANS:180671_AT
taccttttgttggaaacctcttgatgttaactgagaaagttaaaccaggatacaaattgt
gggatagcttaacacaacaatatggatcggtttttacattttggatggctggccttccaa
tggtttttgtgactgattggaagttaataaaacaatattttattaaagatggaggaagct
atgttggaagaccagaatttcctctaaatactgaagtaaaaaaaggtccatatggaatta
tagacgctcatggaaatcgatggattcaacaaagaagatttgctttacatgttctcagag
attttggattgggaaagaatattatggaggagaagatattaactgaagtgactgttatga
ttgagagattacgaaaaacaattgcctgcgtggatatgcaaaatgtttttgatacttcaa
taggttcaattatcaactctttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCTTTTGTTGGAAACCTCTTGAT 119 649 107 Antisense
GAAACCTCTTGATGTTAACTGAGAA 596 357 119 Antisense
TATGGATCGGTTTTTACATTTTGGA 471 653 187 Antisense
ACATTTTGGATGGCTGGCCTTCCAA 120 105 202 Antisense
GCTGGCCTTCCAATGGTTTTTGTGA 606 293 214 Antisense
GAGGAAGCTATGTTGGAAGACCAGA 436 405 278 Antisense
GAAGACCAGAATTTCCTCTAAATAC 562 339 293 Antisense
GACGCTCATGGAAATCGATGGATTC 377 381 349 Antisense
GAAGATTTGCTTTACATGTTCTCAG 454 337 380 Antisense
AAAACAATTGCCTGCGTGGATATGC 471 129 481 Antisense
AATAGGTTCAATTATCAACTCTTTG 439 171 525 Antisense
Sequence Source Affymetrix Proprietary Database