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[180670_at]

Description C08G5.5 /REP_DB=WormBase Gene ID /WP=CE19694 /TR=Q9TZL2 /GB=AAC67418.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 479
1 2 3 4 range
A 495.2
(3)
P 		241.1
(-1.7)
A 		168
(-3)
A 		347.7
(0.3)
M 		327
B 625.1
(3)
P 		185.2
(-2.6)
A 		155.7
(-3)
A 		275.9
(-1.5)
P 		469
C 619.6
(3)
P 		254.9
(-1.6)
A 		145.9
(-3)
A 		204.3
(-2.3)
P 		474
avr 580
(3) 		227.1
(-2) 		156.5
(-3) 		276
(-1.3) 		424

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 428
1 2 3 4 5 6 range
A 369.2
(3)
P 		243
(0.6)
P 		147.5
(-1.2)
A 		208.1
(-0)
A 		174.8
(-0.6)
A 		49.2
(-3)
A 		320
B 290.5
(1.5)
P 		358.6
(3)
P 		254.7
(0.7)
A 		228
(0.1)
P 		225.5
(0.1)
M 		86.5
(-3)
A 		272
C 477.5
(3)
P 		281.8
(0.1)
P 		189.4
(-1.2)
A 		238.9
(-0.5)
A 		225.9
(-0.7)
M 		68.4
(-3)
A 		409
avr 379.1
(3) 		294.5
(1.4) 		197.2
(-0.5) 		225
(0) 		208.7
(-0.3) 		68
(-3) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 180.3
(3)
P 		52.3
(-2.6)
A 		43.9
(-3)
A 		50.9
(-2.7)
M 		136
B 199.3
(3)
P 		45.7
(-2.6)
A 		36.1
(-3)
A 		58.8
(-2.2)
P 		163
C 205.1
(3)
P 		73.3
(-1.6)
A 		50.9
(-2.4)
A 		34.5
(-3)
P 		171
avr 194.9
(3) 		57.1
(-2.5) 		43.6
(-3) 		48.1
(-2.8) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 68.1
(1.5)
P 		86.4
(3)
P 		32.1
(-1.4)
A 		52.8
(0.3)
A 		52.7
(0.3)
A 		12
(-3)
A 		74
B 101.1
(1.7)
P 		119.4
(3)
P 		61.9
(-1)
A 		60.4
(-1.1)
P 		91.6
(1.1)
M 		32.2
(-3)
A 		87
C 177
(3)
P 		86
(-0.5)
P 		48.2
(-2)
A 		48
(-2)
A 		73.1
(-1)
M 		22.9
(-3)
A 		154
avr 115.4
(3) 		97.3
(1.8) 		47.4
(-1.4) 		53.7
(-1) 		72.5
(0.2) 		22.4
(-3) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180670_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5147
Sequence Type Exemplar sequence
Representative Public ID C08G5.5 NCBI
Target Description C08G5.5 /REP_DB=WormBase Gene ID /WP=CE19694 /TR=Q9TZL2 /GB=AAC67418.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061402(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061402 NCBI Caenorhabditis elegans C08G5.5 (C08G5.5) mRNA, complete cds. 11/11 None
SNAP00000029169 ENSEMBL cdna:SNAP chromosome:CEL140:II:756409:756888:-1 11/11 None
GENEFINDER00000029173 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:756409:756924:-1 11/11 None
C08G5.5 ENSEMBL cdna:known chromosome:CEL140:II:756409:756888:-1 gene:C08G5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:756408-756888(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08G5.5
Entrez Gene 173463 Entrez gene
SwissProt Q9TZL2 EMBL-EBI
WormBase CE19694 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67418 Hypothetical protein C08G5.5 [Caenorhabditis elegans] ref|NP_493803.1| C08G5.5 [Caenorhabditis elegans] 1.0E-34
blast CAE69745 Hypothetical protein CBG16019 [Caenorhabditis briggsae] 4.0E-29
blast CAE69745 Hypothetical protein CBG16019 [Caenorhabditis briggsae] 5.0E-20
Sequence
Target Sequence 
>C. ELEGANS:180670_AT
atgtcccgggaggatccatatgacaagccactggacccggaagatgtccgccgctgtctg
aaaaaagttcgggaaaaccaggcggccagggaaatggctcgtgaaccactagtcacccat
ttgccaccaccctccgggctcccaccaatggtctcagaatcctactcggctccgtatgct
caggctccgcccacatctacggggtacccgtcagcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCCCGGGAGGATCCATATGACA 175 49 13 Antisense
CCATATGACAAGCCACTGGACCCGG 17 271 28 Antisense
CACTGGACCCGGAAGATGTCCGCCG 119 199 41 Antisense
TGTCCGCCGCTGTCTGAAAAAAGTT 167 557 57 Antisense
GGAAAACCAGGCGGCCAGGGAAATG 701 527 84 Antisense
CAGGCGGCCAGGGAAATGGCTCGTG 114 209 91 Antisense
AATGGCTCGTGAACCACTAGTCACC 123 163 105 Antisense
TCGTGAACCACTAGTCACCCATTTG 558 603 111 Antisense
CTCCCACCAATGGTCTCAGAATCCT 485 233 151 Antisense
CAATGGTCTCAGAATCCTACTCGGC 52 183 158 Antisense
CATCTACGGGGTACCCGTCAGCACC 510 209 206 Antisense
Sequence Source Affymetrix Proprietary Database