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[180668_at]

Description F56C3.7 /REP_DB=WormBase Gene ID /WP=CE17898 /TR=O61757 /GB=AAC17007.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 33.4
(-3)
A 		53.2
(0.1)
A 		72.1
(3)
P 		46.6
(-1)
A 		39
B 33.5
(-0.6)
A 		25
(-3)
A 		35.6
(-0)
A 		46.5
(3)
A 		22
C 38.7
(-2.5)
A 		42.7
(-2)
M 		33.9
(-3)
A 		87.4
(3)
P 		54
avr 35.2
(-3) 		40.3
(-1.8) 		47.2
(-0.1) 		60.2
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 39.3
(3)
A 		17.1
(-2.8)
A 		16.4
(-3)
A 		32.6
(1.3)
A 		22.7
(-1.3)
A 		16.3
(-3)
A 		23
B 30.4
(1.3)
A 		30.1
(1.2)
A 		31.8
(1.7)
A 		36.5
(3)
A 		18.4
(-2.1)
A 		15.4
(-3)
A 		21
C 29
(-0.6)
A 		44.6
(1.3)
A 		8.5
(-3)
A 		59.3
(3)
A 		40.4
(0.8)
A 		10.5
(-2.8)
A 		51
avr 32.9
(0.9) 		30.6
(0.4) 		18.9
(-2) 		42.8
(3) 		27.2
(-0.3) 		14.1
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 12.2
(-0.3)
A 		11.5
(-0.7)
A 		18.9
(3)
P 		6.8
(-3)
A 		12
B 10.7
(3)
A 		6.2
(-3)
A 		8.2
(-0.3)
A 		9.9
(1.9)
A 		5
C 12.8
(-0.9)
A 		12.3
(-2)
M 		11.8
(-3)
A 		14.7
(3)
P 		3
avr 11.9
(0.8) 		10
(-3) 		13
(3) 		10.5
(-2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 7.2
(1.6)
A 		6.1
(0.2)
A 		3.6
(-3)
A 		8.3
(3)
A 		6.9
(1.2)
A 		4
(-2.5)
A 		5
B 10.6
(3)
A 		10
(2.3)
A 		7.7
(-0.6)
A 		9.7
(1.9)
A 		7.5
(-0.9)
A 		5.8
(-3)
A 		5
C 10.7
(1.5)
A 		13.6
(3)
A 		2.2
(-3)
A 		11.9
(2.1)
A 		13.1
(2.7)
A 		3.5
(-2.3)
A 		11
avr 9.5
(2.5) 		9.9
(2.9) 		4.5
(-2.9) 		10
(3) 		9.2
(2.1) 		4.4
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180668_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18390
Sequence Type Exemplar sequence
Representative Public ID F56C3.7 NCBI
Target Description F56C3.7 /REP_DB=WormBase Gene ID /WP=CE17898 /TR=O61757 /GB=AAC17007.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075853(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075853 NCBI Caenorhabditis elegans F56C3.7 (F56C3.7) mRNA, complete cds. 11/11 None
GENEFINDER00000017315 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1365469:1370781:-1 10/11 None
SNAP00000017305 ENSEMBL cdna:SNAP chromosome:CEL140:X:1370538:1370781:-1 11/11 None
F56C3.7 ENSEMBL cdna:known chromosome:CEL140:X:1370538:1370781:-1 gene:F56C3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1370537-1370781(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56C3.7
Entrez Gene 186366 Entrez gene
SwissProt O61757 EMBL-EBI
WormBase CE17898 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17001 Dystroglycan protein 2 [Caenorhabditis elegans] ref|NP_508253.1| DystroGlycaN family member (dgn-2) [Caenorhabditis elegans] 0.0
blast AAC17007 Hypothetical protein F56C3.7 [Caenorhabditis elegans] ref|NP_508254.1| F56C3.7 [Caenorhabditis elegans] 8.0E-30
blast AAC17007 Hypothetical protein F56C3.7 [Caenorhabditis elegans] ref|NP_508254.1| F56C3.7 [Caenorhabditis elegans] 3.0E-22
blast CAA92012 Hypothetical protein T21B6.1 [Caenorhabditis elegans] ref|NP_509826.1| DystroGlycaN family member (dgn-1) [Caenorhabditis elegans] 2.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508254.1 1 33-55
F56C3.7 1 33-55
GENEFINDER00000017315 2 32-54,349-371
SNAP00000017305 1 33-55
Sequence
Target Sequence 
>C. ELEGANS:180668_AT
cttgcgtccacaccgtagagaagacgtgtatgaaatgcgatcctccgatcaagaacaggt
accggagccggagcagtcaaacataggctactttgcagcgtttcttgcagcgattattgt
cttgtgcggtggaatcgtcacggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGCGTCCACACCGTAGAGAAGAC 586 217 27 Antisense
GACGTGTATGAAATGCGATCCTCCG 644 377 49 Antisense
AATGCGATCCTCCGATCAAGAACAG 357 167 60 Antisense
TCAAGAACAGGTACCGGAGCCGGAG 487 627 75 Antisense
TACCGGAGCCGGAGCAGTCAAACAT 403 649 86 Antisense
GGAGCAGTCAAACATAGGCTACTTT 703 517 96 Antisense
TAGGCTACTTTGCAGCGTTTCTTGC 314 655 110 Antisense
ACTTTGCAGCGTTTCTTGCAGCGAT 249 103 116 Antisense
GCGTTTCTTGCAGCGATTATTGTCT 301 291 124 Antisense
GCGATTATTGTCTTGTGCGGTGGAA 650 289 136 Antisense
TCTTGTGCGGTGGAATCGTCACGGT 499 613 146 Antisense
Sequence Source Affymetrix Proprietary Database