[Home] | [Total List]

[180666_at]

Description F08G12.3 /REP_DB=WormBase Gene ID /WP=CE03168 /TR=Q19212 /GB=CAA91455.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 20      4grp_high_8_8 > 09      6grp_highest_nonorm > 90      6grp_total > 22      4grp_total > 23      6grp_highest_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 172.2
(0.7)
P 		122.7
(-3)
P 		134.7
(-2.1)
P 		202.9
(3)
P 		80
B 302.6
(3)
P 		146.4
(-1.1)
P 		74
(-3)
M 		157.8
(-0.8)
P 		229
C 246.7
(2.3)
P 		98.5
(-2.6)
P 		87.4
(-3)
P 		266.4
(3)
P 		179
avr 240.5
(3) 		122.5
(-2) 		98.7
(-3) 		209
(1.7) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 197.3
(3)
P 		161.2
(0.9)
P 		191.7
(2.7)
P 		168.8
(1.4)
P 		141.4
(-0.2)
P 		92.5
(-3)
P 		105
B 164.6
(2.2)
P 		172.1
(3)
P 		126.4
(-1.9)
P 		166.4
(2.4)
P 		121.3
(-2.5)
P 		116.3
(-3)
P 		56
C 99.7
(-1.5)
P 		159.3
(3)
P 		137.2
(1.3)
P 		137.8
(1.4)
P 		80
(-3)
P 		152.3
(2.5)
P 		79
avr 153.9
(1.8) 		164.2
(3) 		151.8
(1.5) 		157.7
(2.2) 		114.2
(-3) 		120.4
(-2.3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 62.7
(3)
P 		26.6
(-3)
P 		35.2
(-1.6)
P 		29.7
(-2.5)
P 		36
B 96.5
(3)
P 		36.2
(-1.6)
P 		17.2
(-3)
M 		33.6
(-1.8)
P 		79
C 81.7
(3)
P 		28.3
(-3)
P 		30.5
(-2.8)
P 		44.9
(-1.1)
P 		53
avr 80.3
(3) 		30.4
(-2.7) 		27.6
(-3) 		36.1
(-2) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 36.4
(-0.6)
P 		57.3
(3)
P 		41.7
(0.3)
P 		42.8
(0.5)
P 		42.7
(0.5)
P 		22.5
(-3)
P 		35
B 57.3
(3)
P 		57.3
(3)
P 		30.7
(-3)
P 		44.1
(0)
P 		49.3
(1.2)
P 		43.4
(-0.1)
P 		27
C 36.9
(-0.4)
P 		48.6
(2.4)
P 		34.9
(-0.8)
P 		27.7
(-2.6)
P 		25.9
(-3)
P 		51
(3)
P 		25
avr 43.5
(-0.5) 		54.4
(3) 		35.8
(-3) 		38.2
(-2.2) 		39.3
(-1.9) 		39
(-2) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180666_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16899
Sequence Type Exemplar sequence
Representative Public ID F08G12.3 NCBI
Target Description F08G12.3 /REP_DB=WormBase Gene ID /WP=CE03168 /TR=Q19212 /GB=CAA91455.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077486(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077486 NCBI Caenorhabditis elegans F08G12.3 (F08G12.3) mRNA, complete cds. 11/11 None
SNAP00000008601 ENSEMBL cdna:SNAP chromosome:CEL140:X:11300228:11301837:1 11/11 None
GENEFINDER00000008630 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11300228:11301837:1 11/11 None
F08G12.3 ENSEMBL cdna:known chromosome:CEL140:X:11300177:11302029:1 gene:F08G12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11300176-11301837(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08G12.3
Entrez Gene 184210 Entrez gene
SwissProt Q19212 EMBL-EBI
WormBase CE03168 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91455 Hypothetical protein F08G12.3 [Caenorhabditis elegans] ref|NP_509887.1| F08G12.3 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180666_AT
atgtacactttcccgaaacctgaaggtgcaatgcaaaccctcaattataatgttcacaat
gggcttggaccatcaacactcagctcaccaggaaagattaaggagaaaaaaagcttcacc
caatataggaagattaatgaacggttctctcaaacaaaatcacctaccttatacacaaac
atcttcggcgaaacttcgatgtcagttatgaacgcagccaatgccatcagatcctgggaa
gacagaaaagctgttgcagagcatattcatacctatgttgagaagaaaagtttacttcac
gaattcgttcgcaaaatttcaaatattggacttcgagagctcagtggtttctttggggca
gcaagaaaaccacttccatgggatgcaaaggaaaatcaaatctttgagatggttttccca
aagttagctgtctttttatacgcaacaaatcgaaccccacatgtcgtcgcagaaatggag
cttctctctgaacatcaatacgatttcaagaaacatttcaaaacggccaacaagaaaaaa
tacaatccaaatgggctctgttatttggaggatattctggatgtcttcgaggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTACACTTTCCCGAAACCTGAAG 576 45 652 Antisense
GGTGCAATGCAAACCCTCAATTATA 390 501 676 Antisense
ATGGGCTTGGACCATCAACACTCAG 56 51 710 Antisense
ATCACCTACCTTATACACAAACATC 160 29 810 Antisense
TGAACGCAGCCAATGCCATCAGATC 149 573 860 Antisense
GGACTTCGAGAGCTCAGTGGTTTCT 675 523 979 Antisense
GGGGCAGCAAGAAAACCACTTCCAT 415 497 1006 Antisense
GATGGTTTTCCCAAAGTTAGCTGTC 56 409 1059 Antisense
AACAAATCGAACCCCACATGTCGTC 161 135 1095 Antisense
GGAGCTTCTCTCTGAACATCAATAC 12 521 1128 Antisense
GGATATTCTGGATGTCTTCGAGGGA 447 509 1221 Antisense
Sequence Source Affymetrix Proprietary Database