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[180665_at]

Description D2021.4 /REP_DB=WormBase Gene ID /WP=CE02584 /TR=Q09521 /GB=AAB36861.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 47      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 81      6grp_total > 47      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1266
1 2 3 4 range
A 343.8
(-2.2)
P 		177.6
(-3)
P 		195
(-2.9)
P 		1443.8
(3)
P 		1266
B 446.3
(-1.6)
P 		201.1
(-3)
P 		239.6
(-2.8)
P 		1224.7
(3)
P 		1024
C 363.3
(-2.3)
P 		235.8
(-3)
P 		274.1
(-2.8)
P 		1364.3
(3)
P 		1129
avr 384.5
(-2.1) 		204.8
(-3) 		236.2
(-2.8) 		1344.3
(3) 		1140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 427.6
(3)
P 		293
(-0.2)
P 		322.9
(0.5)
P 		275.9
(-0.6)
P 		176.6
(-3)
P 		344.1
(1)
P 		251
B 364.5
(2)
P 		238.2
(-1)
P 		156.9
(-3)
P 		156.2
(-3)
P 		227.7
(-1.3)
P 		406.1
(3)
P 		250
C 403.2
(2.7)
P 		255.3
(-0.2)
P 		204.8
(-1.2)
P 		145.2
(-2.3)
P 		110.5
(-3)
P 		416.7
(3)
P 		306
avr 398.4
(3) 		262.2
(-0.6) 		228.2
(-1.5) 		192.4
(-2.4) 		171.6
(-3) 		389
(2.8) 		227
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 125.2
(0)
P 		38.5
(-3)
P 		51
(-2.6)
P 		211.3
(3)
P 		173
B 142.3
(-0.4)
P 		49.7
(-3)
P 		55.5
(-2.8)
P 		261
(3)
P 		211
C 120.3
(-1.1)
P 		67.8
(-3)
P 		95.5
(-2)
P 		230
(3)
P 		162
avr 129.3
(-0.5) 		52
(-3) 		67.3
(-2.5) 		234.1
(3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 78.8
(0)
P 		104.2
(3)
P 		70.3
(-1)
P 		70
(-1)
P 		53.3
(-3)
P 		83.8
(0.6)
P 		51
B 126.8
(1.7)
P 		79.3
(-0.8)
P 		38.1
(-3)
P 		41.4
(-2.8)
P 		92.5
(-0.1)
P 		151.4
(3)
P 		113
C 149.4
(3)
P 		77.9
(-0.6)
P 		52.1
(-1.9)
P 		29.2
(-3)
P 		35.8
(-2.7)
P 		139.5
(2.5)
P 		120
avr 118.3
(2.5) 		87.1
(0.1) 		53.5
(-2.5) 		46.9
(-3) 		60.5
(-2) 		124.9
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180665_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16715
Sequence Type Exemplar sequence
Representative Public ID D2021.4 NCBI
Target Description D2021.4 /REP_DB=WormBase Gene ID /WP=CE02584 /TR=Q09521 /GB=AAB36861.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077046(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077046 NCBI Caenorhabditis elegans D2021.4 (D2021.4) mRNA, complete cds. 11/11 None
GENEFINDER00000016418 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8546276:8548911:-1 11/11 None
SNAP00000016413 ENSEMBL cdna:SNAP chromosome:CEL140:X:8546435:8548911:-1 11/11 None
D2021.4 ENSEMBL cdna:known chromosome:CEL140:X:8546704:8548911:-1 gene:D2021.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8546702-8548910(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2021.4
Entrez Gene 183943 Entrez gene
SwissProt Q09521 EMBL-EBI
WormBase CE02584 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB36861 Hypothetical protein D2021.4 [Caenorhabditis elegans] ref|NP_509447.1| D2021.4 [Caenorhabditis elegans] 1.0E-141
blast AAB36861 Hypothetical protein D2021.4 [Caenorhabditis elegans] ref|NP_509447.1| D2021.4 [Caenorhabditis elegans] 1.0E-134
blast CAE74916 Hypothetical protein CBG22797 [Caenorhabditis briggsae] 1.0E-119
blast CAE74916 Hypothetical protein CBG22797 [Caenorhabditis briggsae] 3.0E-94
blast NP_822751 putative acyl-CoA thioesterase [Streptomyces avermitilis MA-4680] dbj|BAC69286.1| putative acyl-CoA thioesterase [Streptomyces avermitilis MA-4680] 7.0E-10
blast NP_822751 putative acyl-CoA thioesterase [Streptomyces avermitilis MA-4680] dbj|BAC69286.1| putative acyl-CoA thioesterase [Streptomyces avermitilis MA-4680] 8.0E-10
Sequence
Target Sequence 
>C. ELEGANS:180665_AT
attttgtttctgcaggtgatccgagaaagttaattgacattaaaatcgaaaaagtcggaa
atgtgtacactgctgatgtctatcatgaaaacaaaaaaattggattggctcacattaaaa
ctgacagcaagtttctcagaaaaataccatttccatcggatgtgccgggacttttatctt
taccaaacatggaacgacaaattgaaaatcagctatctacaaaacaaagaaaagattttg
aactatttttgaagcacgtggtttttgatattcgtcctttatatatgctgtctggtccgg
cttctggcgaacacagagtggtttactatgcacggcttactccagagtgcattgacatta
tccgagaagatggaggaatggtagcggttgtagctttatctgattttatggttctgcagt
cagtgcaaaatgcaatcaacaaagctggacttagaatgagcactggagcatcgttacatc
acaaaatccacttccatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTGTTTCTGCAGGTGATCCGAG 9 15 221 Antisense
ATGTGTACACTGCTGATGTCTATCA 14 51 281 Antisense
TACCATTTCCATCGGATGTGCCGGG 407 651 365 Antisense
TGTGCCGGGACTTTTATCTTTACCA 41 555 381 Antisense
GTGGTTTTTGATATTCGTCCTTTAT 88 489 478 Antisense
TTATATATGCTGTCTGGTCCGGCTT 339 679 499 Antisense
TCCGGCTTCTGGCGAACACAGAGTG 405 593 516 Antisense
TTACTATGCACGGCTTACTCCAGAG 362 683 543 Antisense
TCCAGAGTGCATTGACATTATCCGA 413 587 561 Antisense
GCACTGGAGCATCGTTACATCACAA 536 315 680 Antisense
TACATCACAAAATCCACTTCCATCA 275 645 695 Antisense
Sequence Source Affymetrix Proprietary Database