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[180664_s_at]

Description ZK180.6 /REP_DB=WormBase Gene ID /WP=CE07624 /TR=Q23447 /GB=AAB52970.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2964
1 2 3 4 range
A 101.8
(-3)
A 		2516
(2.6)
P 		2673
(3)
P 		142.1
(-2.9)
A 		2571
B 92
(-3)
A 		2578.5
(2.1)
P 		3029.8
(3)
P 		103.8
(-3)
A 		2938
C 127.8
(-2.9)
A 		2388.5
(2.6)
P 		2554.9
(3)
P 		66.3
(-3)
A 		2489
avr 107.2
(-3) 		2494.3
(2.4) 		2752.6
(3) 		104.1
(-3) 		2649

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1623
1 2 3 4 5 6 range
A 106.1
(-3)
A 		1728.6
(3)
P 		682.5
(-0.9)
P 		628.3
(-1.1)
P 		843.8
(-0.3)
P 		354.3
(-2.1)
P 		1623
B 120
(-3)
A 		1652.5
(3)
P 		757.1
(-0.5)
P 		755.9
(-0.5)
P 		691.2
(-0.8)
P 		296.3
(-2.3)
P 		1533
C 129
(-3)
A 		1381
(3)
P 		953.7
(1)
P 		590.9
(-0.8)
P 		805.9
(0.2)
P 		308.7
(-2.1)
P 		1252
avr 118.4
(-3) 		1587.4
(3) 		797.8
(-0.2) 		658.4
(-0.8) 		780.3
(-0.3) 		319.8
(-2.2) 		1469
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 879
1 2 3 4 range
A 37.1
(-2.9)
A 		546.2
(1.6)
P 		698.8
(3)
P 		20.8
(-3)
A 		678
B 29.4
(-2.9)
A 		636.8
(2.4)
P 		702.1
(3)
P 		22.1
(-3)
A 		680
C 42.3
(-2.8)
A 		686.7
(1.6)
P 		890.5
(3)
P 		11.2
(-3)
A 		879
avr 36.3
(-2.9) 		623.2
(1.9) 		763.8
(3) 		18
(-3) 		746

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 595
1 2 3 4 5 6 range
A 19.6
(-3)
A 		614.8
(3)
P 		148.6
(-1.7)
P 		159.4
(-1.6)
P 		254.6
(-0.6)
P 		86.3
(-2.3)
P 		595
B 41.8
(-3)
A 		550
(3)
P 		183.9
(-1.3)
P 		200.2
(-1.1)
P 		280.8
(-0.2)
P 		110.5
(-2.2)
P 		508
C 47.8
(-3)
A 		421.4
(3)
P 		242.7
(0.1)
P 		118.8
(-1.9)
P 		260.8
(0.4)
P 		103.3
(-2.1)
P 		374
avr 36.4
(-3) 		528.7
(3) 		191.7
(-1.1) 		159.5
(-1.5) 		265.4
(-0.2) 		100
(-2.2) 		492
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180664_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11156
Sequence Type Exemplar sequence
Representative Public ID ZK180.6 NCBI
Target Description ZK180.6 /REP_DB=WormBase Gene ID /WP=CE07624 /TR=Q23447 /GB=AAB52970.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068183(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068183 NCBI Caenorhabditis elegans ZK180.6 (ZK180.6) mRNA, complete cds. 11/11 None
SNAP00000005948 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4520369:4524881:-1 11/11 None
GENEFINDER00000005958 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4515292:4523804:-1 11/11 None
ZK180.6 ENSEMBL cdna:known chromosome:CEL140:IV:4520174:4524881:-1 gene:ZK180.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4520374-4524887(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK180.6
Entrez Gene 177219 Entrez gene
SwissProt Q23447 EMBL-EBI
WormBase CE07624 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52970 Hypothetical protein ZK180.6 [Caenorhabditis elegans] ref|NP_500584.1| ZK180.6 [Caenorhabditis elegans] 0.0
blast CAE58544 Hypothetical protein CBG01703 [Caenorhabditis briggsae] 1.0E-158
blast CAE58544 Hypothetical protein CBG01703 [Caenorhabditis briggsae] 1.0E-139
blast AAB52969 Hypothetical protein ZK180.5a [Caenorhabditis elegans] ref|NP_741377.2| ZK180.5a [Caenorhabditis elegans] 3.0E-43
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000005948 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:180664_S_AT
tgagccatctcacaacgttgctccatccaatccagagcccgtcgcagtaatcccagagga
gactgctccaatcattccacagccaaagccaaaaccacaggttcatctccagccagtcgc
accagccgtccgtgtggaagtcacctcgtctgcaccggctccaactattgcatttgaact
cccaattgaagttcacgaggttgtcacaccacaggtcccattaaatccagaaccagctgt
cattcaaacaattactgaacaaccagttgctgaggtacacgttgaggttctgccaacatc
tgctgctccagtatcccagttcttcgagaacataacctccaaggaagataaggagacatc
ccagccctcggagaccgtcgagacagcaccagccaacggaaacgactatgatgaagagaa
atcggtggagaacaaggtttccacggaaaccgacgctgtgccaaatcttggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCCATCTCACAACGTTGCTCCA 14 571 1578 Antisense
GAGGAGACTGCTCCAATCATTCCAC 37 405 1633 Antisense
ACCGGCTCCAACTATTGCATTTGAA 398 87 1731 Antisense
GTTCACGAGGTTGTCACACCACAGG 356 445 1768 Antisense
ACACCACAGGTCCCATTAAATCCAG 324 109 1783 Antisense
AATCCAGAACCAGCTGTCATTCAAA 430 167 1801 Antisense
TGAGGTACACGTTGAGGTTCTGCCA 268 565 1848 Antisense
TCCAGTATCCCAGTTCTTCGAGAAC 91 591 1884 Antisense
AAGATAAGGAGACATCCCAGCCCTC 469 155 1922 Antisense
ACAGCACCAGCCAACGGAAACGACT 85 107 1960 Antisense
ACCGACGCTGTGCCAAATCTTGGAG 392 89 2026 Antisense
Sequence Source Affymetrix Proprietary Database