[Home] | [Total List]

[180662_at]

Description C54E4.4 /REP_DB=WormBase Gene ID /WP=CE16946 /TR=O44469 /GB=AAK29796.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 34      6grp_total > 05      4grp_total > 46      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 412
1 2 3 4 range
A 526.2
(3)
P 		287.6
(-1.3)
P 		191.2
(-3)
A 		249.2
(-2)
M 		335
B 457.6
(3)
P 		264.8
(-1)
M 		170.2
(-3)
P 		227
(-1.8)
P 		287
C 581.8
(3)
P 		369.5
(-0.5)
P 		221.4
(-3)
P 		227.9
(-2.9)
A 		360
avr 521.9
(3) 		307.3
(-0.9) 		194.3
(-3) 		234.7
(-2.3) 		328

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 735
1 2 3 4 5 6 range
A 530.4
(2.8)
P 		549.3
(3)
P 		254
(-0.9)
P 		252.3
(-0.9)
P 		164
(-2.1)
M 		92.1
(-3)
A 		457
B 527.9
(3)
P 		340.5
(0.6)
P 		270.4
(-0.3)
P 		165.8
(-1.6)
P 		216.1
(-1)
P 		57.7
(-3)
A 		470
C 774.8
(3)
P 		349
(-0.5)
P 		354.7
(-0.4)
P 		195.7
(-1.7)
A 		244.7
(-1.3)
M 		40.2
(-3)
A 		735
avr 611
(3) 		412.9
(0.8) 		293
(-0.5) 		204.6
(-1.5) 		208.3
(-1.4) 		63.3
(-3) 		548
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 191.6
(3)
P 		62.4
(-2)
P 		50
(-2.5)
A 		36.5
(-3)
M 		155
B 145.9
(3)
P 		65.4
(-1.5)
M 		39.5
(-3)
P 		48.4
(-2.5)
P 		106
C 192.6
(3)
P 		106.2
(-0.4)
P 		77.2
(-1.5)
P 		38.4
(-3)
A 		154
avr 176.7
(3) 		78
(-1.4) 		55.6
(-2.4) 		41.1
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 97.8
(-0.4)
P 		195.4
(3)
P 		55.3
(-1.9)
P 		64
(-1.6)
P 		49.5
(-2.1)
M 		22.4
(-3)
A 		173
B 183.7
(3)
P 		113.3
(0.4)
P 		65.7
(-1.4)
P 		43.9
(-2.2)
P 		87.8
(-0.5)
P 		21.5
(-3)
A 		162
C 287.2
(3)
P 		106.5
(-1)
P 		90.3
(-1.3)
P 		39.3
(-2.4)
A 		79.2
(-1.6)
M 		13.5
(-3)
A 		274
avr 189.6
(3) 		138.4
(1.2) 		70.4
(-1.2) 		49.1
(-1.9) 		72.2
(-1.1) 		19.1
(-3) 		171
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180662_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11189
Sequence Type Exemplar sequence
Representative Public ID C54E4.4 NCBI
Target Description C54E4.4 /REP_DB=WormBase Gene ID /WP=CE16946 /TR=O44469 /GB=AAK29796.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067771
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C54E4.4 ENSEMBL cdna:known chromosome:CEL140:IV:2161475:2164869:-1 gene:C54E4.4 None
NM_067771 NCBI Caenorhabditis elegans C54E4.4 (C54E4.4) mRNA, complete cds. None
GENEFINDER00000038609 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2161475:2164869:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2161480-2164875(-) 91.5 100.0
Public Domain and Genome References
Gene Title
Ensembl C54E4.4
Entrez Gene 183789 Entrez gene
SwissProt O44469 EMBL-EBI
WormBase CE29238 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29796 Hypothetical protein C54E4.4 [Caenorhabditis elegans] ref|NP_500172.1| C54E4.4 [Caenorhabditis elegans] 2.0E-54
blast G88642 protein C54E4.4 [imported] - Caenorhabditis elegans 2.0E-49
blast CAE68216 Hypothetical protein CBG13885 [Caenorhabditis briggsae] 6.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500172.1 1 23-45
C54E4.4 1 23-45
GENEFINDER00000038609 1 23-45
Sequence
Target Sequence 
>C. ELEGANS:180662_AT
tggagcgcttacggtagaaccccgacatgattatacttttctgaatgctctcaaccaacg
ccagggacaaacagtgctccgtctgtcgccagcgtcggctctttcctccccaactggcga
tacagttcgacctgcaagtttcccgccaatgtacatagtatcaccgtcttatgaccccaa
attcgatgctccaccatcatatgaggacgctgtgaggacgatggttcagaatggggagcc
tggactaccaaatcagactgtgattacgatacctgagcattctcaatccacttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGCGCTTACGGTAGAACCCCGA 137 547 72 Antisense
TAGAACCCCGACATGATTATACTTT 50 653 86 Antisense
CTCTCAACCAACGCCAGGGACAAAC 587 227 119 Antisense
CTGGCGATACAGTTCGACCTGCAAG 293 241 185 Antisense
ATAGTATCACCGTCTTATGACCCCA 567 19 226 Antisense
CTTATGACCCCAAATTCGATGCTCC 614 221 239 Antisense
GCTCCACCATCATATGAGGACGCTG 483 297 259 Antisense
GAGGACGCTGTGAGGACGATGGTTC 49 405 274 Antisense
GGGAGCCTGGACTACCAAATCAGAC 529 495 305 Antisense
GACTGTGATTACGATACCTGAGCAT 491 375 327 Antisense
ACCTGAGCATTCTCAATCCACTTCA 663 87 342 Antisense
Sequence Source Affymetrix Proprietary Database