[Home] | [Total List]

[180661_at]

Description W04E12.4 /REP_DB=WormBase Gene ID /WP=CE18999 /TR=Q9XUL3 /GB=CAB04913.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 26      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 1.3
(-3)
A 		34.1
(2.2)
A 		9.8
(-1.7)
A 		39.5
(3)
A 		38
B 6.3
(-3)
A 		30.3
(3)
A 		11.4
(-1.7)
A 		11
(-1.8)
A 		24
C 14.2
(-2.2)
A 		6.2
(-3)
A 		7.3
(-2.9)
A 		62.7
(3)
A 		57
avr 7.3
(-3) 		23.5
(0.2) 		9.5
(-2.6) 		37.7
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 32
(0.3)
A 		2.6
(-3)
A 		16.2
(-1.5)
A 		4.4
(-2.8)
A 		25.1
(-0.4)
A 		55.3
(3)
A 		53
B 1.1
(-3)
A 		2.6
(-2.6)
A 		6.6
(-1.4)
A 		4.7
(-2)
A 		3.5
(-2.3)
A 		22
(3)
A 		21
C 2.2
(-3)
A 		3.6
(-2.7)
A 		4.9
(-2.4)
A 		4.4
(-2.5)
A 		30.7
(3)
A 		17.1
(0.1)
A 		29
avr 11.8
(-1.1) 		2.9
(-3) 		9.2
(-1.7) 		4.5
(-2.7) 		19.8
(0.5) 		31.5
(3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.5
(-3)
A 		7.4
(3)
A 		2.6
(-1.2)
A 		5.8
(1.6)
A 		7
B 2
(-3)
A 		7.5
(3)
A 		2.6
(-2.3)
A 		2.3
(-2.7)
A 		6
C 4.7
(-1)
A 		1.8
(-3)
A 		2.5
(-2.5)
A 		10.6
(3)
A 		9
avr 2.4
(-3) 		5.6
(2.1) 		2.6
(-2.7) 		6.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.9
(-0.6)
A 		0.9
(-3)
A 		3.5
(-1.8)
A 		1.1
(-2.9)
A 		7.6
(0.2)
A 		13.5
(3)
A 		13
B 0.4
(-3)
A 		0.9
(-2.6)
A 		1.6
(-2.1)
A 		1.2
(-2.4)
A 		1.4
(-2.2)
A 		8.2
(3)
A 		8
C 0.8
(-3)
A 		1.1
(-2.8)
A 		1.3
(-2.7)
A 		0.9
(-2.9)
A 		9.9
(3)
A 		5.7
(0.2)
A 		9
avr 2.4
(-2) 		1
(-3) 		2.1
(-2.2) 		1.1
(-2.9) 		6.3
(0.9) 		9.1
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180661_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14097
Sequence Type Exemplar sequence
Representative Public ID W04E12.4 NCBI
Target Description W04E12.4 /REP_DB=WormBase Gene ID /WP=CE18999 /TR=Q9XUL3 /GB=CAB04913.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075426(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075426 NCBI Caenorhabditis elegans W04E12.4 (W04E12.4) mRNA, complete cds. 11/11 None
GENEFINDER00000038174 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19739949:19743719:1 10/11 None
W04E12.4 ENSEMBL cdna:known chromosome:CEL140:V:19741663:19743719:1 gene:W04E12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19741662-19743719(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04E12.4
Entrez Gene 189191 Entrez gene
SwissProt Q9XUL3 EMBL-EBI
WormBase CE34100 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04913 Hypothetical protein W04E12.4 [Caenorhabditis elegans] ref|NP_507827.2| W04E12.4 [Caenorhabditis elegans] 1.0E-118
blast CAB04913 Hypothetical protein W04E12.4 [Caenorhabditis elegans] ref|NP_507827.2| W04E12.4 [Caenorhabditis elegans] 1.0E-112
blast CAB03878 Hypothetical protein C14A6.6 [Caenorhabditis elegans] ref|NP_507549.1| C14A6.6 [Caenorhabditis elegans] 4.0E-81
blast CAB03878 Hypothetical protein C14A6.6 [Caenorhabditis elegans] ref|NP_507549.1| C14A6.6 [Caenorhabditis elegans] 5.0E-75
blast CAB03879 Hypothetical protein C14A6.5 [Caenorhabditis elegans] ref|NP_507548.1| C14A6.5 [Caenorhabditis elegans] 1.0E-50
blast CAB03879 Hypothetical protein C14A6.5 [Caenorhabditis elegans] ref|NP_507548.1| C14A6.5 [Caenorhabditis elegans] 2.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507827.2 1 196-215
W04E12.4 1 196-215
GENEFINDER00000038174 1 342-361
Sequence
Target Sequence 
>C. ELEGANS:180661_AT
aaaactggacaagcagttcctgcaaaatacaaaaatgagacttgggacgatattctgaac
gagctgatggaaaactctgaatactggatggatatgacgctgcaaaaactgagaaatctg
gaaaaacttgtggagcaagacgagaatggcgcggaaatttcggaggaagagcaagagatg
ttaatgatgctgaaattggatcaaaatgctcatcaagcaattttgaatcttcgcaactcg
gatttggagggtcttgacccggaagtcaaagacacaattatgtattttagaaagatcgaa
atggaagacgagataattggccaatgggtggcggatgattcagataatgacgaaaacgtc
aaaaacagccccacttctgagcctgaaagcgatgatggcaccgactcggacctcgaatct
gaaattctcgagactgatgagatggatgacgtcactacttctccacagataacttcatca
gttccaaaattcgctctcatctgcattgttccaattgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACTGGACAAGCAGTTCCTGCAA 468 131 19 Antisense
GGGACGATATTCTGAACGAGCTGAT 537 493 62 Antisense
GATGGAAAACTCTGAATACTGGATG 391 405 84 Antisense
TACTGGATGGATATGACGCTGCAAA 358 645 100 Antisense
GACGAGAATGGCGCGGAAATTTCGG 610 377 157 Antisense
GGAAGACGAGATAATTGGCCAATGG 466 531 321 Antisense
GCCAATGGGTGGCGGATGATTCAGA 588 277 338 Antisense
GAAAGCGATGATGGCACCGACTCGG 31 359 403 Antisense
TCACTACTTCTCCACAGATAACTTC 294 627 470 Antisense
ACTTCATCAGTTCCAAAATTCGCTC 585 103 490 Antisense
CTCTCATCTGCATTGTTCCAATTGT 381 231 512 Antisense
Sequence Source Affymetrix Proprietary Database