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[180659_at]

Description C13A2.6 /REP_DB=WormBase Gene ID /WP=CE08118 /TR=O16871 /GB=AAB69878.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 07      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 11.5
(-3)
A 		11.8
(-2.9)
A 		25.7
(3)
A 		14.5
(-1.7)
A 		14
B 23.1
(3)
A 		12.9
(-2.3)
A 		11.6
(-3)
A 		13.6
(-2)
A 		12
C 12.2
(1)
A 		8.4
(-0.8)
A 		3.9
(-3)
A 		16.3
(3)
A 		12
avr 15.6
(3) 		11
(-3) 		13.7
(0.5) 		14.8
(2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 722
1 2 3 4 5 6 range
A 4.9
(-3)
A 		38
(-2.7)
A 		90.6
(-2.3)
A 		723.8
(3)
P 		443.7
(0.7)
P 		46.1
(-2.7)
A 		719
B 11.4
(-2.9)
A 		2.2
(-3)
A 		62
(-2.5)
A 		705
(3)
P 		481.9
(1.1)
P 		66
(-2.5)
A 		703
C 31.3
(-2.8)
A 		5
(-3)
A 		90.8
(-2.2)
A 		686.6
(3)
P 		440.9
(0.8)
P 		12.5
(-2.9)
A 		682
avr 15.9
(-3) 		15.1
(-3) 		81.1
(-2.4) 		705.1
(3) 		455.5
(0.8) 		41.5
(-2.8) 		690
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 4.2
(-0.3)
A 		2.6
(-2.3)
A 		6.7
(3)
A 		2.1
(-3)
A 		5
B 7.4
(3)
A 		3.2
(-2.4)
A 		2.7
(-3)
A 		2.9
(-2.7)
A 		5
C 4.1
(3)
A 		2.4
(-0.8)
A 		1.4
(-3)
A 		2.7
(-0.1)
A 		3
avr 5.2
(3) 		2.7
(-2.8) 		3.6
(-0.7) 		2.6
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 0.9
(-3)
A 		13.5
(-2.6)
A 		19.7
(-2.4)
A 		183.6
(3)
P 		133.9
(1.4)
P 		11.2
(-2.7)
A 		183
B 4
(-2.9)
A 		0.7
(-3)
A 		15.1
(-2.6)
A 		186.7
(2.7)
P 		195.8
(3)
P 		24.6
(-2.3)
A 		195
C 11.6
(-2.6)
A 		1.5
(-3)
A 		23.1
(-2.1)
A 		138.1
(2.8)
P 		142.7
(3)
P 		4.2
(-2.9)
A 		141
avr 5.5
(-3) 		5.2
(-3) 		19.3
(-2.5) 		169.5
(3) 		157.5
(2.6) 		13.3
(-2.7) 		164
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180659_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11379
Sequence Type Exemplar sequence
Representative Public ID C13A2.6 NCBI
Target Description C13A2.6 /REP_DB=WormBase Gene ID /WP=CE08118 /TR=O16871 /GB=AAB69878.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072446(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072446 NCBI Caenorhabditis elegans C13A2.6 (C13A2.6) mRNA, complete cds. 11/11 None
SNAP00000044269 ENSEMBL cdna:SNAP chromosome:CEL140:V:7273651:7275363:1 11/11 None
GENEFINDER00000044276 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7272927:7275363:1 11/11 None
C13A2.6 ENSEMBL cdna:known chromosome:CEL140:V:7272337:7275363:1 gene:C13A2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7272337-7275364(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13A2.6
Entrez Gene 182554 Entrez gene
SwissProt O16871 EMBL-EBI
WormBase CE08118 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69878 Hypothetical protein C13A2.6 [Caenorhabditis elegans] ref|NP_504847.1| C13A2.6 [Caenorhabditis elegans] 0.0
blast AAC69356 Hypothetical protein K08D9.6 [Caenorhabditis elegans] ref|NP_503885.2| K08D9.6 [Caenorhabditis elegans] 0.0
blast AAY43981 Hypothetical protein ZK381.8 [Caenorhabditis elegans] ref|NP_001023614.1| ZK381.8 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:180659_AT
gccaaatcctttgctgggttcagcttcaaagacattgtttcaaatctgagctcatctacc
accgtgaaacgtggaaaagtagttgtaaagccggaacgatacaattcgacatggatccat
tatagttatcacgacgaaaatcggcgtgaaattgaatcgccgaacttggttcatgttcaa
cgaccacttgatgaaaactcggacaatgaaatgacggatgtttggcaaattgattttggt
gctttgaatgagactatacgatcatcggatattgaagcaatagacagagacttagccaaa
ataagaaaaagctcgaaagttatgaaaattgcctccaaattgccgatgaccgatttctat
ctccctattgtatttgagtgctattataagtctttttatgggcctgtattcgatcatcaa
aagggagcagttgggtgcccaaatgctgacacgtgtaaattaccacaaaggaaagagcat
aaatgtgtacattcggatgctgagtacagttctggtccacacatgataccgttcacatat
catttttccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAAATCCTTTGCTGGGTTCAGCT 96 277 1036 Antisense
TTCAAATCTGAGCTCATCTACCACC 636 685 1074 Antisense
AGCTCATCTACCACCGTGAAACGTG 87 65 1084 Antisense
AATTGAATCGCCGAACTTGGTTCAT 109 179 1185 Antisense
TGCCTCCAAATTGCCGATGACCGAT 623 583 1365 Antisense
ATTTCTATCTCCCTATTGTATTTGA 229 17 1388 Antisense
TTATGGGCCTGTATTCGATCATCAA 464 681 1431 Antisense
GGTGCCCAAATGCTGACACGTGTAA 472 501 1469 Antisense
CTGAGTACAGTTCTGGTCCACACAT 164 239 1535 Antisense
GGTCCACACATGATACCGTTCACAT 129 503 1549 Antisense
TACCGTTCACATATCATTTTTCCAA 605 649 1562 Antisense
Sequence Source Affymetrix Proprietary Database