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[180658_at]

Description T24D8.2 /REP_DB=WormBase Gene ID /WP=CE05006 /TR=Q22740 /GB=AAA81447.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 90      6grp_total > 92      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 77.2
(-3)
A 		97
(-1)
A 		138
(3)
P 		105.1
(-0.2)
A 		61
B 96
(-0.2)
A 		142.3
(3)
P 		109.2
(0.7)
P 		55.4
(-3)
A 		87
C 85.9
(-0.3)
P 		117.2
(3)
P 		61.1
(-3)
P 		90.8
(0.2)
A 		56
avr 86.4
(-2.6) 		118.8
(3) 		102.8
(0.3) 		83.8
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 109.9
(-0.2)
P 		74.1
(-2.8)
A 		95.1
(-1.3)
A 		101.9
(-0.8)
P 		152
(3)
P 		72
(-3)
A 		80
B 110.1
(0.3)
P 		137.6
(2.8)
P 		72.4
(-3)
P 		140.1
(3)
P 		120.9
(1.3)
P 		82.8
(-2.1)
P 		68
C 112.3
(1.2)
P 		135.3
(3)
P 		59.1
(-3)
A 		88.9
(-0.7)
A 		94.1
(-0.2)
A 		64.8
(-2.6)
P 		76
avr 110.8
(1.6) 		115.7
(2.2) 		75.5
(-2.7) 		110.3
(1.5) 		122.3
(3) 		73.2
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 28.1
(0.7)
A 		21
(-1.4)
A 		36.1
(3)
P 		15.4
(-3)
A 		21
B 30.6
(1.8)
A 		35.1
(3)
P 		25.3
(0.5)
P 		11.8
(-3)
A 		23
C 28.4
(1.3)
P 		33.7
(3)
P 		21.3
(-1)
P 		15.3
(-3)
A 		18
avr 29
(2.7) 		29.9
(3) 		27.6
(2.1) 		14.2
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 20.3
(-2.4)
P 		26.3
(-1.1)
A 		20.7
(-2.3)
A 		25.9
(-1.2)
P 		45.9
(3)
P 		17.5
(-3)
A 		28
B 38.3
(0.9)
P 		45.8
(2.4)
P 		17.6
(-3)
P 		37.1
(0.7)
P 		49.1
(3)
P 		30.9
(-0.5)
P 		32
C 41.6
(3)
P 		41.3
(2.9)
P 		15
(-3)
A 		17.9
(-2.3)
A 		30.4
(0.5)
A 		21.7
(-1.5)
P 		27
avr 33.4
(0.9) 		37.8
(2) 		17.8
(-3) 		27
(-0.7) 		41.8
(3) 		23.4
(-1.6) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180658_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18102
Sequence Type Exemplar sequence
Representative Public ID T24D8.2 NCBI
Target Description T24D8.2 /REP_DB=WormBase Gene ID /WP=CE05006 /TR=Q22740 /GB=AAA81447.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076026
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000017740 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2344863:2348571:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076026 3/11 Cross Hyb Matching Probes None
NM_076021 1/11 Cross Hyb Matching Probes None
T01B6.1 1/11 Cross Hyb Matching Probes A 
T24D8.2 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2344862-2350456(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE58889 Hypothetical protein CBG02130 [Caenorhabditis briggsae] 9.0E-96
blast AAA81447 Hypothetical protein T24D8.2 [Caenorhabditis elegans] ref|NP_508427.3| T24D8.2 [Caenorhabditis elegans] 6.0E-29
blast NP_508422 T01B6.1 [Caenorhabditis elegans] 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:180658_AT
aagaacgtctgctttcggttcagaaaaaagcgaggctcttgaaacaagggagtgtctcac
tggatcccgctgtacatgagcagaagctcaactttctccgagcccacatcacagagctca
accgtcgtattttggcagtgatggagactagtgataaaggattcccgacgcaccataaca
gaacggcttcaaatggcccgtctacaggtgctaacgatgaccagcttgtgtggctccatc
gtcaaaatcagcgattgaatcaggagctggcggaaaagtcgagaatgatagatcagctga
aaaaagaaaatgagatggttaaaaagagtcaagtacaaagagtagaaagaaatgttccaa
tccaacgaccttctgcgtttgtgaggcctgcttatcaaatccccacaatcatcaataac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAACGTCTGCTTTCGGTTCAGAA 343 153 173 Antisense
TCACTGGATCCCGCTGTACATGAGC 488 625 229 Antisense
GCAGAAGCTCAACTTTCTCCGAGCC 498 311 252 Antisense
ATCACAGAGCTCAACCGTCGTATTT 234 27 280 Antisense
GTGATAAAGGATTCCCGACGCACCA 231 483 323 Antisense
GACGCACCATAACAGAACGGCTTCA 116 381 339 Antisense
TCAAATGGCCCGTCTACAGGTGCTA 494 629 361 Antisense
AACGATGACCAGCTTGTGTGGCTCC 536 143 385 Antisense
AAATGTTCCAATCCAACGACCTTCT 212 119 522 Antisense
TTGTGAGGCCTGCTTATCAAATCCC 82 707 551 Antisense
TCAAATCCCCACAATCATCAATAAC 427 629 567 Antisense
Sequence Source Affymetrix Proprietary Database