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[180656_at]

Description F56C3.3 /REP_DB=WormBase Gene ID /WP=CE17894 /TR=O61753 /GB=AAC17006.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 16.8
(3)
A 		8.3
(-0.5)
A 		2.4
(-3)
A 		11.1
(0.6)
A 		14
B 26.5
(3)
A 		18.9
(-3)
A 		19.7
(-2.4)
A 		24.9
(1.7)
A 		8
C 19
(-1.4)
A 		32.9
(2)
A 		12.1
(-3)
A 		37.2
(3)
A 		25
avr 20.8
(1.3) 		20
(1) 		11.4
(-3) 		24.4
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 29.5
(2.1)
A 		22.8
(0.7)
A 		33.7
(3)
A 		5.6
(-3)
A 		13
(-1.4)
A 		22.4
(0.6)
A 		28
B 22.6
(0.6)
A 		32.7
(3)
P 		7.4
(-3)
A 		30.2
(2.4)
P 		16.8
(-0.8)
A 		24.6
(1.1)
A 		25
C 10.9
(-2)
A 		31.6
(1.1)
A 		4.6
(-3)
A 		43.8
(3)
A 		13.8
(-1.6)
A 		25
(0.1)
A 		39
avr 21
(-0.3) 		29
(3) 		15.2
(-2.7) 		26.5
(2) 		14.5
(-3) 		24
(0.9) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.1
(3)
A 		1.8
(-1.7)
A 		0.6
(-3)
A 		1.6
(-1.9)
A 		6
B 8.5
(3)
A 		4.7
(-2.8)
A 		4.6
(-3)
A 		5.3
(-1.9)
A 		4
C 6.3
(-0.6)
A 		9.5
(3)
A 		4.2
(-3)
A 		6.3
(-0.6)
A 		5
avr 7
(3) 		5.3
(0.4) 		3.1
(-3) 		4.4
(-1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 5.4
(0.6)
A 		8.1
(3)
A 		7.3
(2.3)
A 		1.4
(-3)
A 		3.9
(-0.8)
A 		5.5
(0.7)
A 		7
B 7.9
(1)
A 		10.9
(3)
P 		1.8
(-3)
A 		8
(1.1)
P 		6.8
(0.3)
A 		9.2
(1.9)
A 		9
C 4.1
(-0.9)
A 		9.6
(3)
A 		1.2
(-3)
A 		8.8
(2.4)
A 		4.5
(-0.6)
A 		8.4
(2.1)
A 		8
avr 5.8
(-0.6) 		9.5
(3) 		3.4
(-3) 		6.1
(-0.3) 		5.1
(-1.3) 		7.7
(1.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180656_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18294
Sequence Type Exemplar sequence
Representative Public ID F56C3.3 NCBI
Target Description F56C3.3 /REP_DB=WormBase Gene ID /WP=CE17894 /TR=O61753 /GB=AAC17006.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075849(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075849 NCBI Caenorhabditis elegans F56C3.3 (F56C3.3) mRNA, complete cds. 11/11 None
F56C3.3 ENSEMBL cdna:known chromosome:CEL140:X:1357766:1358527:-1 gene:F56C3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000017313 4/11 Cross Hyb Matching Probes None
SNAP00000017301 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1357765-1358527(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56C3.3
Entrez Gene 186362 Entrez gene
SwissProt O61753 EMBL-EBI
WormBase CE17894 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17006 Hypothetical protein F56C3.3 [Caenorhabditis elegans] ref|NP_508250.1| F56C3.3 [Caenorhabditis elegans] 2.0E-63
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508250.1 1 94-116
F56C3.3 1 94-116
Sequence
Target Sequence 
>C. ELEGANS:180656_AT
gaactttgggctttttccataatgaagcaatctccagaggcaaacttatctttatctttt
tttttgctcatatttttaataatgaaggagtctgcaaaaatctcagacgacaagccaaag
gctagcaaagaagctaaagagaagactgacgcagatgatgatgacaagatctttgggaac
attgtggagtgtagcctgaatcatcgggaggtgcttcgtactgatagtttcacaaatgca
tggaaggagaagccaaaggaaatccattgggtgaagatcggaaaagttattgctatgatc
ttcttcgtcatattcattgtgtcattgggcttgttcatcataagggagcatgaaattgag
cagcttgtgtcaactgctgagaagaatagagaaggtgttcctaaaattagctcccccata
aaacctgaccatggtttcgtgacgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTTGGGCTTTTTCCATAATGA 695 347 16 Antisense
GAAGCAATCTCCAGAGGCAAACTTA 58 341 39 Antisense
TTATCTTTATCTTTTTTTTTGCTCA 80 681 61 Antisense
ATCTCAGACGACAAGCCAAAGGCTA 710 7 115 Antisense
GTGGAGTGTAGCCTGAATCATCGGG 542 487 199 Antisense
GAATCATCGGGAGGTGCTTCGTACT 7 329 213 Antisense
GGAGGTGCTTCGTACTGATAGTTTC 672 515 222 Antisense
GTGTCATTGGGCTTGTTCATCATAA 271 487 334 Antisense
GAGCAGCTTGTGTCAACTGCTGAGA 481 389 373 Antisense
CTCCCCCATAAAACCTGACCATGGT 383 233 426 Antisense
ACCTGACCATGGTTTCGTGACGTCA 462 85 438 Antisense
Sequence Source Affymetrix Proprietary Database