[Home] | [Total List]

[180655_s_at]

Description C01B4.9 /REP_DB=WormBase Gene ID /WP=CE20478 /TR=Q9UAT3 /GB=AAD14701.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 2.1
(-3)
A 		37.8
(3)
A 		3.7
(-2.7)
A 		3.2
(-2.8)
A 		36
B 2
(-3)
A 		8.1
(1.2)
A 		3.4
(-2)
A 		10.8
(3)
A 		9
C 19.6
(0.3)
A 		33.2
(3)
A 		3.4
(-3)
A 		12.7
(-1.1)
A 		30
avr 7.9
(-1.8) 		26.4
(3) 		3.5
(-3) 		8.9
(-1.6) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 46.2
(3)
A 		5.5
(-2.7)
A 		3.3
(-3)
A 		38.6
(1.9)
A 		23.9
(-0.1)
A 		17.9
(-1)
A 		43
B 15.3
(3)
A 		1.7
(-3)
A 		2.6
(-2.6)
A 		3.1
(-2.4)
A 		9.2
(0.3)
A 		9.9
(0.6)
A 		14
C 3.6
(-2.9)
A 		3.4
(-3)
A 		10.2
(-1)
A 		24.1
(3)
A 		13.9
(0)
A 		6.1
(-2.2)
A 		21
avr 21.7
(2.9) 		3.5
(-3) 		5.4
(-2.4) 		21.9
(3) 		15.7
(1) 		11.3
(-0.5) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.8
(-2.8)
A 		8.2
(3)
A 		1
(-2.6)
A 		0.5
(-3)
A 		8
B 0.6
(-3)
A 		2
(1.9)
A 		0.8
(-2.3)
A 		2.3
(3)
A 		2
C 6.5
(0.8)
A 		9.6
(3)
A 		1.2
(-3)
A 		2.1
(-2.4)
A 		8
avr 2.6
(-1.3) 		6.6
(3) 		1
(-3) 		1.6
(-2.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 8.5
(2.1)
A 		1.9
(-2.2)
A 		0.7
(-3)
A 		9.8
(3)
A 		7.2
(1.3)
A 		4.4
(-0.6)
A 		9
B 5.3
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.8
(-2.7)
A 		3.7
(1)
A 		3.7
(1)
A 		5
C 1.3
(-2.5)
A 		1
(-3)
A 		2.6
(-0.5)
A 		4.8
(3)
A 		4.5
(2.5)
A 		2
(-1.4)
A 		4
avr 5
(2.8) 		1.2
(-3) 		1.3
(-2.8) 		5.1
(3) 		5.1
(3) 		3.4
(0.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180655_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15827
Sequence Type Exemplar sequence
Representative Public ID C01B4.9 NCBI
Target Description C01B4.9 /REP_DB=WormBase Gene ID /WP=CE20478 /TR=Q9UAT3 /GB=AAD14701.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071254(11), NM_071280(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071254 NCBI Caenorhabditis elegans Y19D10A.12 (Y19D10A.12) mRNA, complete cds. 11/11 None
NM_071280 NCBI Caenorhabditis elegans C01B4.9 (C01B4.9) mRNA, complete cds. 11/11 None
SNAP00000008428 ENSEMBL cdna:SNAP chromosome:CEL140:V:2482832:2487613:-1 11/11 None
GENEFINDER00000008434 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2482763:2487613:-1 11/11 None
SNAP00000029969 ENSEMBL cdna:SNAP chromosome:CEL140:V:2374871:2379333:-1 11/11 None
GENEFINDER00000029979 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2374802:2379333:-1 11/11 None
Y19D10A.12 ENSEMBL cdna:known chromosome:CEL140:V:2374871:2379333:-1 gene:Y19D10A.12 11/11 None
C01B4.9 ENSEMBL cdna:known chromosome:CEL140:V:2482832:2487613:-1 gene:C01B4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2374870-2379333(-) 99.83 100.0
chrV:2482831-2487613(-) 99.83 100.0
Public Domain and Genome References
Gene Title

Ensembl Y19D10A.12
C01B4.9
Entrez Gene 182056 Entrez gene
189489 Entrez gene
SwissProt Q9UAT3 EMBL-EBI
Q966D6 EMBL-EBI
WormBase CE20478 Wormbase
CE32237 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503655 Y19D10A.12 [Caenorhabditis elegans] gb|AAK68412.2| Hypothetical protein Y19D10A.12 [Caenorhabditis elegans] 0.0
blast AAD14701 Hypothetical protein C01B4.9 [Caenorhabditis elegans] ref|NP_503681.1| C01B4.9 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503655.2 11 42-64,77-99,109-131,138-160,173-195,202-224,343-365,378-400,432-454,467-489,499-521
NP_503681.1 11 42-64,77-99,109-131,138-160,173-195,202-224,370-392,405-427,459-481,494-516,526-548
Y19D10A.12 11 42-64,77-99,109-131,138-160,173-195,202-224,343-365,378-400,432-454,467-489,499-521
C01B4.9 11 42-64,77-99,109-131,138-160,173-195,202-224,370-392,405-427,459-481,494-516,526-548
SNAP00000008428 11 42-64,77-99,109-131,138-160,173-195,202-224,343-365,378-400,432-454,467-489,499-521
GENEFINDER00000008434 12 42-64,77-99,109-131,138-160,173-195,202-224,444-466,479-501,533-555,568-590,600-622,643-665
SNAP00000029969 11 42-64,77-99,109-131,138-160,173-195,202-224,343-365,378-400,432-454,467-489,499-521
GENEFINDER00000029979 12 42-64,77-99,109-131,138-160,173-195,202-224,444-466,479-501,533-555,568-590,600-622,643-665
Sequence
Target Sequence 
>C. ELEGANS:180655_S_AT
tcgtctacttggctcttgccatgaagcagaagaatccggattttactgatgctgaattgt
cacttccagtcactctaatcggtgctttcaacattatgttccgtatcggatgtggaatgg
tcgctgatcatccgaaaatgtcggctcttcaagtttccaacgtcgccaccatcatcgccg
gaacctcgatgctctttgtgccattttgcactgagctctggcattacgtcgttttctgca
tcccgttcagtgccggagttgcttgcttcgccgctcttcgttcggtcatctgcgtcgagc
tgatcggagtcgaaaagctgtcgaacgcgttcggcatcctgatggttttcatgggaatcg
gcgctgtcgtcggcgggccgattgccgctcaaatcaaggatatcactggcaactacgaca
ttagcttctacgtgatgggcatcattttcgccttctccggcgtcatgactatccgtttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTCTACTTGGCTCTTGCCATGAA 90 605 1169 Antisense
GATGCTGAATTGTCACTTCCAGTCA 138 415 1216 Antisense
TCCAGTCACTCTAATCGGTGCTTTC 64 591 1233 Antisense
GTGGAATGGTCGCTGATCATCCGAA 292 489 1280 Antisense
GGCTCTTCAAGTTTCCAACGTCGCC 199 539 1311 Antisense
CACTGAGCTCTGGCATTACGTCGTT 134 199 1377 Antisense
ATCTGCGTCGAGCTGATCGGAGTCG 455 31 1456 Antisense
GGTTTTCATGGGAATCGGCGCTGTC 537 505 1512 Antisense
GGATATCACTGGCAACTACGACATT 701 507 1566 Antisense
TGATGGGCATCATTTTCGCCTTCTC 705 565 1601 Antisense
TCCGGCGTCATGACTATCCGTTTGC 32 595 1624 Antisense
Sequence Source Affymetrix Proprietary Database