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[180653_at]

Description C38C3.8 /REP_DB=WormBase Gene ID /WP=CE08645 /TR=O17079 /GB=AAB70329.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 19.8
(-1.4)
A 		60.6
(3)
A 		27.8
(-0.5)
A 		5
(-3)
A 		56
B 31.3
(-0.6)
A 		25.6
(-3)
A 		34.2
(0.7)
A 		39.6
(3)
A 		14
C 7.9
(-3)
A 		61.3
(2)
A 		40.3
(0)
A 		71.9
(3)
A 		64
avr 19.7
(-3) 		49.2
(3) 		34.1
(-0.1) 		38.8
(0.9) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 57.6
(3)
M 		10.7
(-2.7)
A 		23.6
(-1.2)
A 		28.2
(-0.6)
A 		32
(-0.1)
A 		8.5
(-3)
A 		49
B 34.7
(3)
A 		31.7
(2.4)
A 		27.3
(1.5)
A 		29
(1.8)
A 		31.3
(2.3)
A 		5.4
(-3)
A 		29
C 35.7
(0.3)
A 		25.2
(-1)
A 		26.1
(-0.9)
A 		9.5
(-3)
A 		57.6
(3)
A 		17.9
(-2)
A 		48
avr 42.7
(3) 		22.5
(-0.8) 		25.7
(-0.2) 		22.2
(-0.8) 		40.3
(2.6) 		10.6
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 7.2
(0.1)
A 		13.2
(3)
A 		7.3
(0.2)
A 		0.7
(-3)
A 		13
B 10
(3)
A 		6.3
(-3)
A 		7.9
(-0.4)
A 		8.4
(0.4)
A 		4
C 2.6
(-3)
A 		17.6
(3)
A 		14.1
(1.6)
A 		12.1
(0.8)
A 		15
avr 6.6
(-3) 		12.4
(3) 		9.8
(0.3) 		7.1
(-2.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.6
(3)
M 		3.8
(-1.8)
A 		5.1
(-0.9)
A 		7.2
(0.6)
A 		9.7
(2.4)
A 		2.1
(-3)
A 		9
B 12.1
(2.7)
A 		10.5
(1.8)
A 		6.6
(-0.4)
A 		7.7
(0.2)
A 		12.7
(3)
A 		2
(-3)
A 		11
C 13.2
(1)
A 		7.7
(-0.9)
A 		6.6
(-1.3)
A 		1.9
(-3)
A 		18.7
(3)
A 		6
(-1.5)
A 		17
avr 12
(2) 		7.3
(-0.7) 		6.1
(-1.4) 		5.6
(-1.7) 		13.7
(3) 		3.4
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180653_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15807
Sequence Type Exemplar sequence
Representative Public ID C38C3.8 NCBI
Target Description C38C3.8 /REP_DB=WormBase Gene ID /WP=CE08645 /TR=O17079 /GB=AAB70329.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071032 NCBI Caenorhabditis elegans C38C3.8 (C38C3.8) mRNA, complete cds. 11/11 None
SNAP00000040094 ENSEMBL cdna:SNAP chromosome:CEL140:V:1504527:1505139:-1 11/11 None
GENEFINDER00000040104 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1504527:1505139:-1 11/11 None
C38C3.8 ENSEMBL cdna:known chromosome:CEL140:V:1504527:1505139:-1 gene:C38C3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1504526-1505139(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C38C3.8
Entrez Gene 183303 Entrez gene
SwissProt O17079 EMBL-EBI
WormBase CE08645 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70329 Hypothetical protein C38C3.8 [Caenorhabditis elegans] ref|NP_503433.1| C38C3.8 [Caenorhabditis elegans] 2.0E-99
blast CAE73710 Hypothetical protein CBG21223 [Caenorhabditis briggsae] 2.0E-69
blast CAE56304 Hypothetical protein CBG23962 [Caenorhabditis briggsae] 5.0E-69
Sequence
Target Sequence 
>C. ELEGANS:180653_AT
ggattcttggactgtcctgccaatcggagcacccttcccgccgagctcagtccaatgcat
gtgtgaggagaatatgcacgtagctctctggtacgagcacggaagcccaatctttggacg
ctcgtggagcaacaacggagttgtggaatgctcagtgaccaccaaccaacaactcggagg
acatattcagattctgcagtaccttggggatcacaacgaccaaggtttttggtaccagtg
gatccaatacaaaaaccgttatgagaagctcaacgacacgcatcagctcgtccattgcgg
agacgtcttccctatcttttggaagcgtgtcgaaggaagcctgctcggctacgtgaacag
caagaccgaggaggcgtggttctcctgcgatgggaaggtgatcagacagcacggagcaca
gctcgacgagatgttcgtacttatccgcaactttatcggcggaccaccagagtgtccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTCTTGGACTGTCCTGCCAATC 252 509 36 Antisense
GAATATGCACGTAGCTCTCTGGTAC 618 325 105 Antisense
CGGAAGCCCAATCTTTGGACGCTCG 274 241 135 Antisense
TGGAATGCTCAGTGACCACCAACCA 201 547 179 Antisense
GATTCTGCAGTACCTTGGGGATCAC 591 431 225 Antisense
GAAGCTCAACGACACGCATCAGCTC 217 343 300 Antisense
TCAGCTCGTCCATTGCGGAGACGTC 442 623 318 Antisense
TCGAAGGAAGCCTGCTCGGCTACGT 403 601 365 Antisense
TCAGACAGCACGGAGCACAGCTCGA 16 625 437 Antisense
GATGTTCGTACTTATCCGCAACTTT 179 411 465 Antisense
ATCGGCGGACCACCAGAGTGTCCAT 420 33 490 Antisense
Sequence Source Affymetrix Proprietary Database