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[180652_at]

Description F56C3.6 /REP_DB=WormBase Gene ID /WP=CE17897 /TR=O61756 /GB=AAC17001.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 03      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 40.4
(-3)
A 		98
(1.3)
A 		61.1
(-1.4)
A 		120
(3)
A 		80
B 55.4
(3)
A 		21.7
(-3)
A 		41.1
(0.5)
A 		31.6
(-1.2)
A 		34
C 69.6
(-1)
A 		18.2
(-3)
A 		51.9
(-1.7)
A 		170.5
(3)
A 		152
avr 55.1
(-2.1) 		46
(-3) 		51.4
(-2.5) 		107.4
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 38.9
(-2.9)
A 		66
(1.6)
A 		46.3
(-1.7)
A 		74.5
(3)
A 		40.8
(-2.6)
A 		38.5
(-3)
A 		36
B 52.8
(0.9)
A 		15.5
(-2)
A 		80.1
(3)
A 		2.2
(-3)
A 		30.8
(-0.8)
A 		52.3
(0.9)
A 		78
C 16.4
(-2.5)
A 		87.7
(3)
A 		22.1
(-2)
A 		67.2
(1.4)
A 		9.4
(-3)
A 		77.3
(2.2)
A 		78
avr 36
(-1.2) 		56.4
(3) 		49.5
(1.6) 		48
(1.3) 		27
(-3) 		56
(2.9) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 14.7
(-3)
A 		21.3
(3)
A 		16
(-1.8)
A 		17.6
(-0.4)
A 		7
B 17.7
(3)
A 		5.4
(-3)
A 		9.5
(-1)
A 		6.7
(-2.4)
A 		12
C 23
(1.5)
A 		5.2
(-3)
A 		18.1
(0.3)
A 		28.7
(3)
A 		24
avr 18.5
(3) 		10.6
(-3) 		14.5
(-0) 		17.7
(2.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 7.2
(-3)
A 		23.5
(3)
A 		10.1
(-1.9)
A 		18.9
(1.3)
A 		12.3
(-1.1)
A 		9.4
(-2.2)
A 		16
B 18.4
(2.7)
A 		5.2
(-1.5)
A 		19.5
(3)
A 		0.6
(-3)
A 		12.5
(0.8)
A 		19.5
(3)
A 		19
C 6.1
(-2.2)
A 		26.7
(3)
A 		5.6
(-2.4)
A 		13.5
(-0.4)
A 		3.1
(-3)
A 		25.9
(2.8)
A 		24
avr 10.6
(-2.2) 		18.5
(3) 		11.7
(-1.4) 		11
(-1.9) 		9.3
(-3) 		18.3
(2.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180652_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18282
Sequence Type Exemplar sequence
Representative Public ID F56C3.6 NCBI
Target Description F56C3.6 /REP_DB=WormBase Gene ID /WP=CE17897 /TR=O61756 /GB=AAC17001.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075852(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075852 NCBI Caenorhabditis elegans DystroGlycaN family member (dgn-2) (dgn-2) mRNA, complete cds. 11/11 None
SNAP00000017304 ENSEMBL cdna:SNAP chromosome:CEL140:X:1365469:1367511:-1 11/11 None
GENEFINDER00000017315 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1365469:1370781:-1 11/11 None
F56C3.6 ENSEMBL cdna:known chromosome:CEL140:X:1365469:1367511:-1 gene:F56C3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1365468-1367511(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dgn-2
Ensembl F56C3.6
Entrez Gene 186365 Entrez gene
SwissProt O61756 EMBL-EBI
WormBase CE17897 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17001 Dystroglycan protein 2 [Caenorhabditis elegans] ref|NP_508253.1| DystroGlycaN family member (dgn-2) [Caenorhabditis elegans] 0.0
blast AAC17007 Hypothetical protein F56C3.7 [Caenorhabditis elegans] ref|NP_508254.1| F56C3.7 [Caenorhabditis elegans] 3.0E-22
blast CAA92012 Hypothetical protein T21B6.1 [Caenorhabditis elegans] ref|NP_509826.1| DystroGlycaN family member (dgn-1) [Caenorhabditis elegans] 2.0E-19
blast CAE70793 Hypothetical protein CBG17551 [Caenorhabditis briggsae] 3.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508253.1 2 7-24,337-359
F56C3.6 2 7-24,337-359
SNAP00000017304 2 7-24,337-359
GENEFINDER00000017315 2 32-54,349-371
Sequence
Target Sequence 
>C. ELEGANS:180652_AT
tccatctccgaaccacttgttcaagttggtaatatccgatcctgccgtggagattttcga
caatttcccacactaccgcacgatttttattgaaacactcgcggaggctctcaacagtga
tatggatttgattgctcttgatgagatctacgaagttcgggactacaccattatctcgtt
tttcaacaactcattgtcgacgtcaacttgcgattccaaggctatcatcaaggttgctga
gaagatgtactacaccaacggtcggaaaccttcagctcgcttcctcaccaagatgggaga
agatttcgtggtaaaaaacgcaatgttcagcgcaattggtcagtgcaaaggagttttctc
ttcgccaaggcctactacaagaacttctaacactactacagccgctatgacaactctcaa
gccgagtctcaaaaaaggaagcagcactactggcaccattttgtccctgggtaccatttg
tgctatcgttgttattttgcactacggatgcaagaaggaggtgaaagaggagaaaacccc
ggacaacgagccgctgatcccgtctgagcaaaccttgggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATCTCCGAACCACTTGTTCAAG 126 589 585 Antisense
AATATCCGATCCTGCCGTGGAGATT 152 173 615 Antisense
CCCACACTACCGCACGATTTTTATT 38 257 651 Antisense
GGACTACACCATTATCTCGTTTTTC 233 525 744 Antisense
AACTCATTGTCGACGTCAACTTGCG 336 141 772 Antisense
GCAAAGGAGTTTTCTCTTCGCCAAG 129 319 929 Antisense
AGAACTTCTAACACTACTACAGCCG 409 73 964 Antisense
CAGCCGCTATGACAACTCTCAAGCC 60 203 983 Antisense
GCAGCACTACTGGCACCATTTTGTC 308 311 1025 Antisense
GTCCCTGGGTACCATTTGTGCTATC 614 475 1047 Antisense
GATCCCGTCTGAGCAAACCTTGGGT 429 415 1140 Antisense
Sequence Source Affymetrix Proprietary Database