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[180651_at] 7TM chemoreceptor, srx family

Description C03A7.6 /REP_DB=WormBase Gene ID /WP=CE07864 /TR=O16499 /GB=AAB65997.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 28      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 17.3
(0.8)
A 		24.9
(3)
A 		4
(-3)
A 		8.2
(-1.8)
A 		21
B 6.2
(1.7)
A 		5.2
(0.5)
A 		2.2
(-3)
A 		7.3
(3)
A 		5
C 4.6
(-2.6)
A 		11.1
(-1.6)
A 		1.8
(-3)
A 		40.6
(3)
A 		39
avr 9.4
(-0.5) 		13.7
(1.1) 		2.7
(-3) 		18.7
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 50.6
(3)
A 		20.5
(-0.8)
A 		35.2
(1.1)
A 		2.7
(-3)
A 		3.5
(-2.9)
A 		3.7
(-2.9)
A 		48
B 5.4
(3)
A 		2.9
(-1.4)
A 		2
(-3)
A 		3.9
(0.4)
A 		2.3
(-2.5)
A 		2.7
(-1.8)
A 		3
C 3.4
(-2.5)
A 		6.1
(-2)
A 		31.6
(3)
A 		3.3
(-2.5)
A 		4.2
(-2.4)
A 		0.9
(-3)
A 		31
avr 19.8
(2.1) 		9.8
(-0.8) 		22.9
(3) 		3.3
(-2.7) 		3.3
(-2.7) 		2.4
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 6.3
(3)
A 		5.4
(2)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		5
B 2
(3)
A 		1.3
(0.2)
A 		0.5
(-3)
A 		1.6
(1.4)
A 		2
C 1.5
(-2.1)
A 		3.2
(-0.5)
A 		0.6
(-3)
A 		6.9
(3)
A 		6
avr 3.3
(3) 		3.3
(3) 		0.7
(-3) 		3.2
(2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.3
(3)
A 		7.3
(1.6)
A 		7.7
(1.9)
A 		0.7
(-3)
A 		1.1
(-2.7)
A 		0.9
(-2.9)
A 		9
B 1.9
(3)
A 		1
(-0.9)
A 		0.5
(-3)
A 		1
(-0.9)
A 		0.9
(-1.3)
A 		1
(-0.9)
A 		1
C 1.3
(-2.2)
A 		1.9
(-1.8)
A 		8.1
(3)
A 		0.7
(-2.7)
A 		1.4
(-2.2)
A 		0.3
(-3)
A 		8
avr 4.2
(1.5) 		3.4
(0.4) 		5.4
(3) 		0.8
(-2.9) 		1.1
(-2.5) 		0.7
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180651_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15838
Sequence Type Exemplar sequence
Representative Public ID C03A7.6 NCBI
Target Description C03A7.6 /REP_DB=WormBase Gene ID /WP=CE07864 /TR=O16499 /GB=AAB65997.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071980(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071980 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-39) (srx-39) mRNA, complete cds. 11/11 None
C03A7.6 ENSEMBL cdna:known chromosome:CEL140:V:5156466:5157573:-1 gene:C03A7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5156490-5157573(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-39
Ensembl C03A7.6
Entrez Gene 182138 Entrez gene
SwissProt O16499 EMBL-EBI
WormBase CE35216 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65997 Serpentine receptor, class x protein 39 [Caenorhabditis elegans] ref|NP_504381.2| Serpentine Receptor, class X family member (srx-39) [Caenorhabditis elegans] 1.0E-162
blast AAB66002 Serpentine receptor, class x protein 38 [Caenorhabditis elegans] ref|NP_504380.2| Serpentine Receptor, class X family member (srx-38) [Caenorhabditis elegans] 1.0E-109
blast CAE64083 Hypothetical protein CBG08688 [Caenorhabditis briggsae] 1.0E-92
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504381.2 7 4-26,39-61,81-103,115-137,172-194,207-229,239-261
C03A7.6 7 4-26,39-61,81-103,115-137,172-194,207-229,239-261
Sequence
Target Sequence 
>C. ELEGANS:180651_AT
taactgttggtctagcgattgctgatggaacattttccgcgctctacttattctatgcaa
ctccaatggtatttttcgagagcgatattttatcaaattattcgagtgtttgtggatatg
ttcttatgatttgctacagtgcttcaacaacttttcatttcatgatatcccttaacagaa
ttctagcagtgtataaaccaatgctttatcgtatgatgtttagtgttttgttcacgtttt
gtatagtaatgggaatttattcctacgcacttacaatcataacactattttttcaaattt
gtagtactattttggactttttagctatcggaaaagtgttaaaaattagctcaaaaacag
aaaagcactcaaaagaacttagcttgttgaaacagtccataagccaaactctatttgttc
ttgcaatcgtttgtagttttacttggggtccgcgttttattccagacattgattacacct
ttattttctcttctattctctggtcttcagtgcatatgtttgatggaaatccgaaggagc
tgttccagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACTGTTGGTCTAGCGATTGCTGA 559 637 137 Antisense
TGATGGAACATTTTCCGCGCTCTAC 432 567 159 Antisense
CCGCGCTCTACTTATTCTATGCAAC 319 263 173 Antisense
GCTACAGTGCTTCAACAACTTTTCA 153 301 269 Antisense
TTCATTTCATGATATCCCTTAACAG 116 689 290 Antisense
GAATTTATTCCTACGCACTTACAAT 507 325 389 Antisense
GAAACAGTCCATAAGCCAAACTCTA 136 357 525 Antisense
GTCCGCGTTTTATTCCAGACATTGA 8 477 584 Antisense
TGATTACACCTTTATTTTCTCTTCT 140 565 606 Antisense
TCTTCTATTCTCTGGTCTTCAGTGC 242 615 625 Antisense
GAAATCCGAAGGAGCTGTTCCAGAA 285 361 662 Antisense
Sequence Source Affymetrix Proprietary Database