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[180650_at]

Description C52B9.3 /REP_DB=WormBase Gene ID /WP=CE04255 /TR=Q22939 /GB=AAK39213.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 82      6grp_total > 98      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 419
1 2 3 4 range
A 345
(0.7)
P 		184.4
(-3)
P 		191.8
(-2.8)
P 		442.2
(3)
P 		258
B 435.9
(1.7)
P 		169
(-3)
P 		175.2
(-2.9)
P 		510.6
(3)
P 		342
C 456.7
(1.5)
P 		195.4
(-2.3)
P 		143.9
(-3)
P 		562.7
(3)
P 		419
avr 412.5
(1.3) 		182.9
(-2.8) 		170.3
(-3) 		505.2
(3) 		335

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 317
(-0.3)
P 		229.3
(-1.9)
P 		170.2
(-3)
P 		296.8
(-0.7)
P 		474.4
(2.5)
P 		502.4
(3)
P 		332
B 315.3
(-1.5)
P 		312.3
(-1.6)
P 		266.4
(-3)
P 		323
(-1.3)
P 		448.6
(2.5)
P 		466.9
(3)
P 		201
C 376
(-0.2)
P 		300.7
(-3)
P 		338.6
(-1.6)
P 		342.7
(-1.5)
P 		428.1
(1.7)
P 		463.4
(3)
P 		163
avr 336.1
(-0.9) 		280.8
(-2.4) 		258.4
(-3) 		320.8
(-1.3) 		450.4
(2.3) 		477.6
(3) 		219
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 125.6
(3)
P 		40
(-3)
P 		50.1
(-2.3)
P 		64.7
(-1.3)
P 		86
B 139
(3)
P 		41.7
(-2.9)
P 		40.6
(-3)
P 		108.8
(1.2)
P 		98
C 151.2
(3)
P 		56.2
(-2.6)
P 		50.1
(-3)
P 		94.9
(-0.3)
P 		101
avr 138.6
(3) 		46
(-3) 		46.9
(-2.9) 		89.5
(-0.2) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 58.4
(-1.8)
P 		81.6
(-0.5)
P 		37.1
(-3)
P 		75.3
(-0.8)
P 		143.1
(3)
P 		122.3
(1.8)
P 		106
B 109.7
(-0.7)
P 		104
(-1)
P 		64.7
(-3)
P 		85.6
(-1.9)
P 		182.3
(3)
P 		174.1
(2.6)
P 		118
C 139.4
(1.9)
P 		91.8
(-1.4)
P 		86.2
(-1.8)
P 		68.9
(-3)
P 		138.5
(1.8)
P 		155.1
(3)
P 		86
avr 102.5
(-0.4) 		92.5
(-1.1) 		62.7
(-3) 		76.6
(-2.1) 		154.6
(3) 		150.5
(2.7) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180650_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16479
Sequence Type Exemplar sequence
Representative Public ID C52B9.3 NCBI
Target Description C52B9.3 /REP_DB=WormBase Gene ID /WP=CE04255 /TR=Q22939 /GB=AAK39213.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171665(11), NM_171947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171665 NCBI Caenorhabditis elegans C52B9.3a (C52B9.3) mRNA, complete cds. 11/11 None
NM_171947 NCBI Caenorhabditis elegans C52B9.3b (C52B9.3) mRNA, complete cds. 11/11 None
GENEFINDER00000014564 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4268052:4270196:1 11/11 None
C52B9.3a ENSEMBL cdna:known chromosome:CEL140:X:4265856:4270137:1 gene:C52B9.3 11/11 None
C52B9.3b ENSEMBL cdna:known chromosome:CEL140:X:4265857:4270523:1 gene:C52B9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014550 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4265906-4270138(+) 100.0 100.0
Public Domain and Genome References
Ensembl C52B9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741764 C52B9.3a [Caenorhabditis elegans] gb|AAK39213.1| Hypothetical protein C52B9.3a [Caenorhabditis elegans] 0.0
blast NP_741765 C52B9.3b [Caenorhabditis elegans] gb|AAN72420.1| Hypothetical protein C52B9.3b [Caenorhabditis elegans] 0.0
blast CAE68549 Hypothetical protein CBG14382 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180650_AT
atttagccaagacctctatcgactcttgggacagtctagatcaactcaacagaatgacct
ctatcagcgatctccgtgtgccaaacattccattattagacgccctcaccaatgaagagc
ggctgcatcttatcattggtcgtctacatcatttgcgcgtgctcaacggctccaaaatat
caagcgaacaaagagagcaatctgaacggttcttcattcggtactatcaggagcaaaagg
agaaacctctgcaatacaaaactctgattgataagcacgggaacctcgagaagttggtga
ccatcgacctgacaccgaagaaagaagccgttgtgaagatcttgtgcgaggagaaggaag
tgaatcaggagattactatctcactggaaccaaccgtactcgactttatgaaaatcttag
acccaaaagttggagtgaaattcacacggatgaagctgtttctactccgagaggatggcc
ggacagacgatttttcatcgagtgattacaatatgccgttacactacttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTAGCCAAGACCTCTATCGACTC 664 13 686 Antisense
CAGAATGACCTCTATCAGCGATCTC 124 205 735 Antisense
TCTCCGTGTGCCAAACATTCCATTA 394 609 756 Antisense
AACATTCCATTATTAGACGCCCTCA 367 137 769 Antisense
GACGCCCTCACCAATGAAGAGCGGC 699 379 784 Antisense
GCTGCATCTTATCATTGGTCGTCTA 31 295 807 Antisense
AACGGTTCTTCATTCGGTACTATCA 493 143 890 Antisense
GATTACTATCTCACTGGAACCAACC 501 429 1056 Antisense
GAACCAACCGTACTCGACTTTATGA 289 165 1072 Antisense
GGATGGCCGGACAGACGATTTTTCA 408 513 1158 Antisense
ACAATATGCCGTTACACTACTTCAA 335 115 1193 Antisense
Sequence Source Affymetrix Proprietary Database