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[180649_at]

Description C35E7.3 /REP_DB=WormBase Gene ID /WP=CE17516 /TR=O61773 /GB=AAC17519.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 08      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 2.5
(-3)
A 		20.5
(-1.2)
A 		22.4
(-1)
A 		63.1
(3)
A 		61
B 5.2
(-2.8)
A 		3.6
(-3)
A 		11.5
(-2.1)
A 		54.7
(3)
A 		51
C 15.4
(-1.6)
A 		5.7
(-3)
A 		18.7
(-1.1)
A 		46.2
(3)
A 		41
avr 7.7
(-3) 		9.9
(-2.7) 		17.5
(-1.7) 		54.7
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 16.8
(0)
A 		3.7
(-3)
A 		28.2
(2.6)
A 		4.1
(-2.9)
A 		29.9
(3)
A 		29.9
(3)
A 		26
B 14.7
(-0.5)
A 		18.3
(0.3)
A 		13.5
(-0.8)
A 		3
(-3)
A 		16.8
(-0.1)
A 		31.1
(3)
A 		28
C 5.1
(-3)
A 		5.8
(-2.9)
A 		17.9
(-1.3)
A 		34
(0.8)
A 		14
(-1.8)
A 		50.2
(3)
A 		45
avr 12.2
(-2.4) 		9.3
(-3) 		19.9
(-0.7) 		13.7
(-2.1) 		20.2
(-0.6) 		37.1
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.9
(-3)
A 		4.5
(-0.4)
A 		5.8
(0.5)
A 		9.2
(3)
A 		8
B 1.7
(-2.6)
A 		0.9
(-3)
A 		2.7
(-2)
A 		11.7
(3)
A 		11
C 5.1
(0.4)
A 		1.6
(-3)
A 		6.5
(1.7)
A 		7.8
(3)
A 		6
avr 2.6
(-2.8) 		2.3
(-3) 		5
(-0.8) 		9.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.1
(-1.4)
A 		1.3
(-2.8)
A 		6.1
(0.8)
A 		1
(-3)
A 		9
(3)
A 		7.3
(1.7)
A 		8
B 5.1
(-0.6)
A 		6.1
(-0.1)
A 		3.3
(-1.6)
A 		0.8
(-3)
A 		6.8
(0.3)
A 		11.6
(3)
A 		11
C 1.9
(-3)
A 		1.8
(-3)
A 		4.6
(-1.9)
A 		6.8
(-1)
A 		4.5
(-1.9)
A 		16.8
(3)
A 		15
avr 3.4
(-2.7) 		3.1
(-2.9) 		4.7
(-1.8) 		2.9
(-3) 		6.8
(-0.4) 		11.9
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180649_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2079
Sequence Type Exemplar sequence
Representative Public ID C35E7.3 NCBI
Target Description C35E7.3 /REP_DB=WormBase Gene ID /WP=CE17516 /TR=O61773 /GB=AAC17519.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060431(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060431 NCBI Caenorhabditis elegans C35E7.3 (C35E7.3) mRNA, complete cds. 11/11 None
SNAP00000013375 ENSEMBL cdna:SNAP chromosome:CEL140:I:10845107:10846998:1 11/11 None
GENEFINDER00000013382 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10845107:10846998:1 9/11 None
C35E7.3 ENSEMBL cdna:known chromosome:CEL140:I:10845107:10846998:1 gene:C35E7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10845037-10846929(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35E7.3
Entrez Gene 172991 Entrez gene
SwissProt O61773 EMBL-EBI
WormBase CE17516 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17519 Hypothetical protein C35E7.3 [Caenorhabditis elegans] ref|NP_492832.1| C35E7.3 [Caenorhabditis elegans] 0.0
blast CAE63899 Hypothetical protein CBG08470 [Caenorhabditis briggsae] 1.0E-84
blast CAE63899 Hypothetical protein CBG08470 [Caenorhabditis briggsae] 1.0E-67
blast CAE63901 Hypothetical protein CBG08472 [Caenorhabditis briggsae] 1.0E-57
Sequence
Target Sequence 
>C. ELEGANS:180649_AT
aagaaacttgacatgccaatctactttggatatcattttgaagaagggaaaactcgcaaa
tacttgttcaacaaccgaacattacaattcgaacgtattaaatgtccagattgtatattt
gattcgaggaaaattgtgagatcaagagctctcactactgatctggcagtgatcagatgt
gatctaacgagcaagattatcaaattgaagaggaagccgatgggaagagttgagaagtca
attgaaacgagacatggatttttgccgttgggaaaagcaccgattcgatttttgaagtac
ttggcagtagaagatatcttgaaacactacactccaatccgtcgaaatccttgtgatcct
caatatttccaatcattcgattccaaaaacgaggaaaaatggtttctactcaattattcc
aatttgtgcgaaaaaaagaataatatcagcgcaatgatcatcggaatggatggaactatt
cgaaatgttgtacttcaagataaaatggaaaaagagctggagcaatttgaagatgaaact
tcctggagtcaagata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAAACTTGACATGCCAATCTACT 316 153 871 Antisense
GAAAACTCGCAAATACTTGTTCAAC 294 355 918 Antisense
GAGCTCTCACTACTGATCTGGCAGT 6 389 1016 Antisense
GCCGTTGGGAAAAGCACCGATTCGA 621 279 1134 Antisense
GCACCGATTCGATTTTTGAAGTACT 324 315 1147 Antisense
CTTGAAACACTACACTCCAATCCGT 590 1 1188 Antisense
CTCCAATCCGTCGAAATCCTTGTGA 28 237 1202 Antisense
ATCCTTGTGATCCTCAATATTTCCA 448 39 1217 Antisense
AATATTTCCAATCATTCGATTCCAA 493 173 1232 Antisense
TCAGCGCAATGATCATCGGAATGGA 267 623 1316 Antisense
GATGAAACTTCCTGGAGTCAAGATA 167 381 1402 Antisense
Sequence Source Affymetrix Proprietary Database