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[180645_at]

Description K06H6.5 /REP_DB=WormBase Gene ID /WP=CE11836 /TR=O17104 /GB=AAB70364.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 38.5
(0.2)
A 		53.3
(3)
A 		21.3
(-3)
A 		46.7
(1.8)
A 		32
B 27.3
(-3)
A 		42.1
(-0.3)
A 		39.3
(-0.8)
A 		60.7
(3)
A 		33
C 49.6
(0.1)
A 		41.2
(-0.6)
A 		10.6
(-3)
A 		85.8
(3)
A 		75
avr 38.5
(-0.8) 		45.5
(0.2) 		23.7
(-3) 		64.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 7.6
(-3)
A 		47.8
(0.8)
A 		26.5
(-1.2)
A 		48.1
(0.8)
A 		19.1
(-1.9)
A 		71.2
(3)
A 		64
B 10.9
(-2)
A 		40.5
(3)
A 		21.4
(-0.2)
A 		4.7
(-3)
A 		15
(-1.3)
A 		6.8
(-2.6)
A 		36
C 26.4
(-0)
A 		50.1
(3)
A 		3.2
(-3)
A 		26.2
(-0.1)
A 		11.7
(-1.9)
A 		24.8
(-0.2)
A 		47
avr 15
(-3) 		46.1
(3) 		17
(-2.6) 		26.3
(-0.8) 		15.3
(-2.9) 		34.3
(0.7) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14
(3)
A 		11.6
(1.3)
A 		5.6
(-3)
A 		6.8
(-2.1)
A 		8
B 8.7
(-3)
A 		10.4
(-0.6)
A 		9.1
(-2.4)
A 		12.9
(3)
A 		4
C 16.4
(3)
A 		11.8
(0.8)
A 		3.7
(-3)
A 		14.5
(2.1)
A 		13
avr 13
(3) 		11.3
(1.5) 		6.1
(-3) 		11.4
(1.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.4
(-3)
A 		17
(2.9)
A 		5.8
(-1.3)
A 		12.2
(1.1)
A 		5.8
(-1.3)
A 		17.3
(3)
A 		16
B 3.8
(-1.7)
A 		13.5
(3)
A 		5.2
(-1)
A 		1.2
(-3)
A 		6.1
(-0.6)
A 		2.5
(-2.4)
A 		12
C 9.8
(0.7)
A 		15.3
(3)
A 		0.8
(-3)
A 		5.3
(-1.1)
A 		3.8
(-1.8)
A 		8.3
(0.1)
A 		15
avr 5
(-2.4) 		15.3
(3) 		3.9
(-3) 		6.2
(-1.8) 		5.2
(-2.3) 		9.4
(-0.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180645_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14898
Sequence Type Exemplar sequence
Representative Public ID K06H6.5 NCBI
Target Description K06H6.5 /REP_DB=WormBase Gene ID /WP=CE11836 /TR=O17104 /GB=AAB70364.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070849(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070849 NCBI Caenorhabditis elegans K06H6.5 (K06H6.5) mRNA, complete cds. 11/11 None
SNAP00000003549 ENSEMBL cdna:SNAP chromosome:CEL140:V:576193:578257:1 11/11 None
GENEFINDER00000003558 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:576193:578257:1 11/11 None
K06H6.5 ENSEMBL cdna:known chromosome:CEL140:V:576199:578257:1 gene:K06H6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:576198-578257(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06H6.5
Entrez Gene 187074 Entrez gene
SwissProt O17104 EMBL-EBI
WormBase CE11836 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70364 Hypothetical protein K06H6.5 [Caenorhabditis elegans] ref|NP_503250.1| K06H6.5 [Caenorhabditis elegans] 0.0
blast NP_503791 C31B8.9 [Caenorhabditis elegans] gb|AAG23972.2| Hypothetical protein C31B8.9 [Caenorhabditis elegans] 2.0E-90
blast NP_504940 C54F6.3 [Caenorhabditis elegans] gb|AAG24008.1| Hypothetical protein C54F6.3 [Caenorhabditis elegans] 2.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503250.1 1 7-29
K06H6.5 1 7-29
SNAP00000003549 1 9-31
GENEFINDER00000003558 1 9-31
Sequence
Target Sequence 
>C. ELEGANS:180645_AT
attgcatggtctgcttatgctcctttgtacgagaacggaactatgtcaatgagcagaatg
accaagttagcattcataagacatccagagtctcgattcgtttcctttttcgtcgacaag
tgtataaatacaaactcgtgctacggttgcagagatttgcattgtgcggtgaaactggta
tatgacagactaatgaaccacgtccaaaaccgtcacttgattgaccaatcagagtcagag
ctctggtggtttgattggcacgcggctcctcaaacctggaactgcgatttttacaaacat
ctcaccgattatcatctcatcaaaattggcacttcacaaaaagaccgaaaacttgcgatg
aagcagttgcaaatcgcattaaaaactgcaaacgtcgaggataagtacatcgagaaaatc
atggcggacactttggtcagtgatacaaagcatggaactcatcagtctaaatcaaacctt
aggattttgcagcaggttcgtactgatccttatgttcgtcactaccttcatcgaatctac
tactttgactacgtggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCATGGTCTGCTTATGCTCCTT 333 5 412 Antisense
ATCCAGAGTCTCGATTCGTTTCCTT 177 41 494 Antisense
TCGTTTCCTTTTTCGTCGACAAGTG 12 577 509 Antisense
ACAAACTCGTGCTACGGTTGCAGAG 30 105 541 Antisense
ATGAACCACGTCCAAAACCGTCACT 514 23 604 Antisense
GCTCTGGTGGTTTGATTGGCACGCG 185 299 651 Antisense
GCTCCTCAAACCTGGAACTGCGATT 308 297 676 Antisense
ACATCTCACCGATTATCATCTCATC 56 107 708 Antisense
GCAGCAGGTTCGTACTGATCCTTAT 465 313 900 Antisense
TTATGTTCGTCACTACCTTCATCGA 670 679 921 Antisense
GAATCTACTACTTTGACTACGTGGC 243 323 944 Antisense
Sequence Source Affymetrix Proprietary Database