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[180643_at]

Description T22B7.5 /REP_DB=WormBase Gene ID /WP=CE13948 /TR=Q23040 /GB=AAB04592.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 13      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 115.6
(-0.4)
P 		94.6
(-1.6)
A 		68.4
(-3)
A 		177.1
(3)
P 		109
B 145.7
(3)
P 		68.9
(-1.8)
P 		49.6
(-3)
A 		104.8
(0.4)
P 		96
C 80.8
(-0.6)
P 		34.2
(-3)
A 		41
(-2.7)
A 		151.2
(3)
P 		117
avr 114
(1) 		65.9
(-2.2) 		53
(-3) 		144.4
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 92.3
(3)
A 		66.2
(-0.8)
A 		75.4
(0.5)
A 		81.2
(1.4)
A 		51.4
(-3)
P 		59.6
(-1.8)
A 		41
B 84.4
(2.4)
P 		86.6
(2.7)
A 		88.3
(3)
A 		48.3
(-3)
A 		73.5
(0.8)
P 		66.5
(-0.3)
P 		40
C 47.9
(-2.1)
P 		94.6
(1)
P 		35
(-3)
A 		125.2
(3)
A 		98.4
(1.2)
P 		104.8
(1.6)
P 		90
avr 74.9
(-0.2) 		82.5
(2.2) 		66.2
(-3) 		84.9
(3) 		74.4
(-0.4) 		77
(0.5) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 42.1
(3)
P 		20.5
(-2.4)
A 		17.9
(-3)
A 		25.9
(-1)
P 		24
B 46.5
(3)
P 		17
(-2.1)
P 		11.5
(-3)
A 		22.3
(-1.1)
P 		35
C 26.7
(3)
P 		9.8
(-3)
A 		14.3
(-1.4)
A 		25.5
(2.6)
P 		17
avr 38.4
(3) 		15.8
(-2.7) 		14.6
(-3) 		24.6
(-0.5) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 17
(-1.3)
A 		23.5
(3)
A 		16.4
(-1.7)
A 		20.6
(1.1)
A 		15.5
(-2.3)
P 		14.5
(-3)
A 		9
B 29.4
(2.9)
P 		28.8
(2.6)
A 		21.4
(0)
A 		12.8
(-3)
A 		29.8
(3)
P 		24.8
(1.2)
P 		17
C 17.7
(-1)
P 		28.9
(1.6)
P 		8.9
(-3)
A 		25.2
(0.7)
A 		31.8
(2.2)
P 		35.1
(3)
P 		26
avr 21.4
(0) 		27.1
(3) 		15.6
(-3) 		19.5
(-1) 		25.7
(2.3) 		24.8
(1.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180643_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16459
Sequence Type Exemplar sequence
Representative Public ID T22B7.5 NCBI
Target Description T22B7.5 /REP_DB=WormBase Gene ID /WP=CE13948 /TR=Q23040 /GB=AAB04592.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076549
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000005784 ENSEMBL cdna:SNAP chromosome:CEL140:X:5642875:5644473:-1 9/11 None
GENEFINDER00000005791 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5642875:5644898:-1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076549 8/11 Cross Hyb Matching Probes None
T22B7.5 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5641981-5643521(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04593 Serpentine receptor, class v protein 7 [Caenorhabditis elegans] ref|NP_508950.2| Serpentine Receptor, class V family member (srv-7) [Caenorhabditis elegans] 1.0E-176
blast CAE68775 Hypothetical protein CBG14717 [Caenorhabditis briggsae] 1.0E-163
blast AAB04593 Serpentine receptor, class v protein 7 [Caenorhabditis elegans] ref|NP_508950.2| Serpentine Receptor, class V family member (srv-7) [Caenorhabditis elegans] 1.0E-151
blast CAE68775 Hypothetical protein CBG14717 [Caenorhabditis briggsae] 1.0E-121
blast T25904 hypothetical protein T22B7.5 - Caenorhabditis elegans 2.0E-91
blast T25904 hypothetical protein T22B7.5 - Caenorhabditis elegans 3.0E-91
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000005784 5 10-29,49-71,99-121,152-174,184-206
GENEFINDER00000005791 6 13-35,50-72,85-107,174-196,227-249,259-281
Sequence
Target Sequence 
>C. ELEGANS:180643_AT
aacaacgcagccacatcttaatcaaaaagtgatgaatgataaacaaagacaggaatataa
tttgaacattgttgctgcattgacgtgtgttgctgaaattatatattattgttatgtgat
ctacgtttttggaatcaacacaagtgttcctacgagggtcttttatcttctctacgatgt
tatcaatgatttgtactgtggcatttctggctggctgttgttgatatattcccgttccat
gaaagctcatgtgacaaaaatgttaaggtgccctatgttcggtttccggcggatgagaat
catgataccacctgaacagcagttcgcgtcgtctacgaatattgatggaaacaaaaacac
ttcgaacagaagggtaccaacttgtggaacaccatgcagttcaaaacagaaaaaacaaaa
aaaagcaaaaacaattattcaaaaactccctatttttattgttcaccaaaatgtgttgaa
tgaaaataatgggtctacagtagcttggcaattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAACGCAGCCACATCTTAATCAA 1 135 111 Antisense
GTTGCTGCATTGACGTGTGTTGCTG 496 439 181 Antisense
TACGAGGGTCTTTTATCTTCTCTAC 291 649 261 Antisense
TTGTACTGTGGCATTTCTGGCTGGC 455 705 301 Antisense
GCTGTTGTTGATATATTCCCGTTCC 464 295 324 Antisense
ATATTCCCGTTCCATGAAAGCTCAT 469 19 336 Antisense
CCTATGTTCGGTTTCCGGCGGATGA 549 267 382 Antisense
GAATCATGATACCACCTGAACAGCA 497 327 407 Antisense
CTGAACAGCAGTTCGCGTCGTCTAC 198 237 422 Antisense
GGTACCAACTTGTGGAACACCATGC 345 503 483 Antisense
GGGTCTACAGTAGCTTGGCAATTCA 382 497 601 Antisense
Sequence Source Affymetrix Proprietary Database