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[180642_at]

Description F53A9.2 /REP_DB=WormBase Gene ID /WP=CE02762 /TR=Q20689 /GB=AAC46557.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_high_8_8 > 07      6grp_highest_nonorm > 93      6grp_total > 58      4grp_total > 0      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 94.2
(-0.4)
P 		50.4
(-3)
A 		151.8
(3)
P 		101.5
(0)
P 		101
B 82.7
(-1.3)
P 		59.6
(-3)
P 		86.9
(-1)
P 		142.5
(3)
P 		83
C 108.3
(-0.1)
P 		62.7
(-3)
A 		114.3
(0.3)
P 		156.9
(3)
P 		94
avr 95.1
(-0) 		57.6
(-3) 		117.7
(1.7) 		133.6
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1202
1 2 3 4 5 6 range
A 738.6
(0.1)
P 		216.4
(-2.6)
P 		133.3
(-3)
P 		194.2
(-2.7)
P 		295.9
(-2.2)
P 		1294.3
(3)
P 		1161
B 628.7
(1.1)
P 		154.1
(-2.5)
P 		92.2
(-3)
P 		123.2
(-2.8)
P 		215.3
(-2.1)
P 		880.7
(3)
P 		789
C 692.9
(0.7)
P 		151.4
(-2.7)
P 		102
(-3)
P 		202.1
(-2.4)
P 		348.8
(-1.4)
P 		1057.2
(3)
P 		955
avr 686.7
(0.6) 		174
(-2.6) 		109.2
(-3) 		173.2
(-2.6) 		286.7
(-1.9) 		1077.4
(3) 		968
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 34.3
(1.9)
P 		10.9
(-3)
A 		39.7
(3)
P 		14.9
(-2.2)
P 		29
B 26.4
(1.5)
P 		14.7
(-3)
P 		20.1
(-0.9)
P 		30.4
(3)
P 		16
C 35.8
(1.9)
P 		18
(-3)
A 		39.8
(3)
P 		26.5
(-0.7)
P 		22
avr 32.2
(2.7) 		14.5
(-3) 		33.2
(3) 		23.9
(0) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 136.2
(-0.8)
P 		76.9
(-2)
P 		29
(-3)
P 		49.2
(-2.6)
P 		89.3
(-1.7)
P 		315.1
(3)
P 		286
B 218.7
(0.8)
P 		51.3
(-2.4)
P 		22.4
(-3)
P 		32.6
(-2.8)
P 		87.5
(-1.7)
P 		328.4
(3)
P 		306
C 256.8
(1.2)
P 		46.2
(-2.6)
P 		26
(-3)
P 		40.6
(-2.7)
P 		112.9
(-1.4)
P 		353.9
(3)
P 		328
avr 203.9
(0.5) 		58.1
(-2.4) 		25.8
(-3) 		40.8
(-2.7) 		96.6
(-1.6) 		332.5
(3) 		307
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180642_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16447
Sequence Type Exemplar sequence
Representative Public ID F53A9.2 NCBI
Target Description F53A9.2 /REP_DB=WormBase Gene ID /WP=CE02762 /TR=Q20689 /GB=AAC46557.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077072(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077072 NCBI Caenorhabditis elegans F53A9.2 (F53A9.2) mRNA, complete cds. 11/11 None
SNAP00000001074 ENSEMBL cdna:SNAP chromosome:CEL140:X:8709702:8709953:1 11/11 None
GENEFINDER00000001087 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8709702:8709953:1 11/11 None
F53A9.2 ENSEMBL cdna:known chromosome:CEL140:X:8709702:8709953:1 gene:F53A9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8709700-8709952(+) 78.97 100.0
Public Domain and Genome References
Gene Title
Ensembl F53A9.2
Entrez Gene 186143 Entrez gene
SwissProt Q20689 EMBL-EBI
WormBase CE02762 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Sequence
Target Sequence 
>C. ELEGANS:180642_AT
aatccatatggagcctacgggaatgttccaccgccagtctatggaacacctggtttagca
ccaccaactgttcatgtccatacagatggagggcatcaccatggtcaccaccaccaccat
catagtttcctccatgaacttggacatgcgctaactggacaccatcatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCATATGGAGCCTACGGGAATG 409 165 40 Antisense
TGGAGCCTACGGGAATGTTCCACCG 302 545 48 Antisense
TTCCACCGCCAGTCTATGGAACACC 146 699 65 Antisense
TGGAACACCTGGTTTAGCACCACCA 615 547 81 Antisense
TGGTTTAGCACCACCAACTGTTCAT 592 551 90 Antisense
AGATGGAGGGCATCACCATGGTCAC 421 65 123 Antisense
CACCATCATAGTTTCCTCCATGAAC 573 201 154 Antisense
GTTTCCTCCATGAACTTGGACATGC 41 451 164 Antisense
GAACTTGGACATGCGCTAACTGGAC 121 351 175 Antisense
TGGACATGCGCTAACTGGACACCAT 673 547 180 Antisense
TGCGCTAACTGGACACCATCATCAT 658 581 186 Antisense
Sequence Source Affymetrix Proprietary Database