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[180641_at]

Description C23H5.1 /REP_DB=WormBase Gene ID /WP=CE17436 /TR=O61833 /GB=AAC17532.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 62      4grp_high_8_8 > 36      6grp_total > 53      4grp_total > 27      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 48.6
(-3)
P 		89.1
(1.8)
P 		57.9
(-1.9)
P 		99.6
(3)
A 		51
B 41.6
(-1.1)
M 		50.6
(0.3)
A 		29.6
(-3)
A 		67.7
(3)
P 		38
C 87.3
(3)
P 		76.8
(0.4)
P 		80.7
(1.4)
P 		62.9
(-3)
A 		24
avr 59.2
(-2.1) 		72.2
(1.7) 		56.1
(-3) 		76.7
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 65
(1.8)
A 		48.1
(-3)
P 		69.2
(3)
P 		68.5
(2.8)
P 		66.1
(2.1)
P 		51.3
(-2.1)
P 		21
B 41.2
(-3)
P 		63.2
(-0.1)
P 		86.4
(3)
P 		49.5
(-1.9)
P 		44
(-2.6)
P 		70.5
(0.9)
P 		45
C 65.4
(3)
P 		34.3
(-3)
A 		39.6
(-2)
P 		55.2
(1)
A 		61.9
(2.3)
P 		35.2
(-2.8)
P 		31
avr 57.2
(0.1) 		48.5
(-3) 		65.1
(3) 		57.7
(0.3) 		57.3
(0.2) 		52.3
(-1.6) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 17.7
(1)
P 		19.3
(3)
P 		15.1
(-2.4)
P 		14.6
(-3)
A 		5
B 13.3
(2.1)
M 		12.5
(1.5)
A 		6.9
(-3)
A 		14.4
(3)
P 		8
C 28.9
(3)
P 		22.1
(0.8)
P 		28.1
(2.7)
P 		10.6
(-3)
A 		18
avr 20
(3) 		18
(1.2) 		16.7
(0.1) 		13.2
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 12
(-3)
A 		17.1
(0.9)
P 		15.1
(-0.6)
P 		17.4
(1.1)
P 		19.9
(3)
P 		12.5
(-2.6)
P 		8
B 14.4
(-2.4)
P 		21
(0.6)
P 		21
(0.6)
P 		13.1
(-3)
P 		17.9
(-0.8)
P 		26.3
(3)
P 		13
C 24.2
(3)
P 		10.5
(-2.8)
A 		10.1
(-3)
P 		11.1
(-2.6)
A 		20
(1.2)
P 		11.8
(-2.3)
P 		14
avr 16.9
(0.3) 		16.2
(-0.4) 		15.4
(-1.3) 		13.9
(-3) 		19.3
(3) 		16.9
(0.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180641_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10507
Sequence Type Exemplar sequence
Representative Public ID C23H5.1 NCBI
Target Description C23H5.1 /REP_DB=WormBase Gene ID /WP=CE17436 /TR=O61833 /GB=AAC17532.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067767(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067767 NCBI Caenorhabditis elegans C23H5.1 (C23H5.1) mRNA, complete cds. 11/11 None
C23H5.1 ENSEMBL cdna:known chromosome:CEL140:IV:2131019:2133863:1 gene:C23H5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034539 5/11 Cross Hyb Matching Probes None
GENEFINDER00000034541 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2131024-2133869(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C23H5.1
Entrez Gene 182821 Entrez gene
SwissProt O61833 EMBL-EBI
WormBase CE17436 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17532 Hypothetical protein C23H5.1 [Caenorhabditis elegans] ref|NP_500168.1| C23H5.1 [Caenorhabditis elegans] 0.0
blast CAE65563 Hypothetical protein CBG10553 [Caenorhabditis briggsae] 1.0E-107
blast AAF98614 Hypothetical protein C18H7.9 [Caenorhabditis elegans] ref|NP_499956.1| C18H7.9 [Caenorhabditis elegans] 1.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500168.1 3 273-292,305-327,332-354
C23H5.1 3 273-292,305-327,332-354
Sequence
Target Sequence 
>C. ELEGANS:180641_AT
gagcccagattcaaaaagagcccgaaagcccgtttgtcgatggggaagttgttggaatta
atttttatgcgaatggagaagtttgcggaagctcgaaaatcgctctccactcccgcgaat
tctatgagcaatgcttcaaagcggcaggattttcacaaattgaatggattgcaccgcatt
tcacggatcatgcaaaaaacttgctcggcgagcaattttgctttcaatttttgaatcctc
catgtgatattatgttcaaatgtgttaaaatcactgccacatggcaacaagcttcattgg
aaaatcacatttctgatccgaaaaatgtgaaattttttctaacggttctcaactttttcc
ttcaaatttccttattttttctgattttttatcgcaaaaaacgacacaatcaactaattc
taattcccgccgcaagtgcgctccaatgcattttcggattattgattgaatttctgtttt
tatcgattttcgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCCAGATTCAAAAAGAGCCCGA 74 385 497 Antisense
GAAAGCCCGTTTGTCGATGGGGAAG 329 357 520 Antisense
CCGCGAATTCTATGAGCAATGCTTC 64 263 609 Antisense
GATTGCACCGCATTTCACGGATCAT 659 433 663 Antisense
GAATCCTCCATGTGATATTATGTTC 165 331 729 Antisense
GTGTTAAAATCACTGCCACATGGCA 433 485 758 Antisense
GCCACATGGCAACAAGCTTCATTGG 380 279 772 Antisense
GGAAAATCACATTTCTGATCCGAAA 147 529 795 Antisense
AATCAACTAATTCTAATTCCCGCCG 244 169 904 Antisense
AGTGCGCTCCAATGCATTTTCGGAT 619 59 931 Antisense
ATTTCTGTTTTTATCGATTTTCGCG 147 17 966 Antisense
Sequence Source Affymetrix Proprietary Database