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[180640_at]

Description R03H4.5 /REP_DB=WormBase Gene ID /WP=CE07408 /TR=Q21688 /GB=AAC48106.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 03      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 1.9
(-3)
A 		2.1
(-2.8)
A 		2.5
(-2.5)
A 		9.4
(3)
A 		8
B 2.1
(-2.5)
A 		3.9
(0.6)
A 		1.8
(-3)
A 		5.3
(3)
A 		4
C 4.8
(-1.8)
A 		1.5
(-2.7)
A 		0.4
(-3)
A 		22.3
(3)
A 		22
avr 2.9
(-2.3) 		2.5
(-2.5) 		1.6
(-3) 		12.3
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 1.5
(-3)
A 		9
(-2.5)
A 		10.8
(-2.4)
A 		87.6
(3)
P 		84
(2.7)
P 		16.1
(-2)
A 		86
B 0.8
(-3)
A 		1
(-3)
A 		1
(-3)
A 		113.9
(3)
P 		102.6
(2.4)
P 		10
(-2.5)
A 		113
C 0.5
(-3)
A 		7.1
(-2.6)
A 		4.7
(-2.8)
A 		107.1
(3)
P 		65.9
(0.7)
P 		11.8
(-2.4)
A 		107
avr 0.9
(-3) 		5.7
(-2.7) 		5.5
(-2.7) 		102.9
(3) 		84.2
(1.9) 		12.6
(-2.3) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.7
(-1.7)
A 		0.5
(-3)
A 		0.7
(-1.7)
A 		1.4
(3)
A 		1
B 0.7
(-0.4)
A 		1
(2.1)
A 		0.4
(-3)
A 		1.1
(3)
A 		1
C 1.6
(-0.7)
A 		0.4
(-2.7)
A 		0.2
(-3)
A 		3.8
(3)
A 		4
avr 1
(-0.9) 		0.6
(-2.3) 		0.4
(-3) 		2.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 0.3
(-3)
A 		3.2
(-2.3)
A 		2.4
(-2.5)
A 		22.2
(2.3)
P 		25.3
(3)
P 		3.9
(-2.1)
A 		25
B 0.3
(-3)
A 		0.3
(-3)
A 		0.2
(-3)
A 		30.2
(1.3)
P 		41.7
(3)
P 		3.7
(-2.5)
A 		42
C 0.2
(-3)
A 		2.2
(-2.4)
A 		1.2
(-2.7)
A 		21.5
(3)
P 		21.3
(2.9)
P 		3.9
(-2)
A 		21
avr 0.3
(-3) 		1.9
(-2.7) 		1.3
(-2.8) 		24.6
(2) 		29.4
(3) 		3.8
(-2.3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180640_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11674
Sequence Type Exemplar sequence
Representative Public ID R03H4.5 NCBI
Target Description R03H4.5 /REP_DB=WormBase Gene ID /WP=CE07408 /TR=Q21688 /GB=AAC48106.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072933(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072933 NCBI Caenorhabditis elegans R03H4.5 (R03H4.5) mRNA, complete cds. 11/11 None
SNAP00000020053 ENSEMBL cdna:SNAP chromosome:CEL140:V:9022182:9023865:-1 11/11 None
GENEFINDER00000020056 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9022182:9024638:-1 11/11 None
R03H4.5 ENSEMBL cdna:known chromosome:CEL140:V:9022182:9024638:-1 gene:R03H4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9022182-9024639(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R03H4.5
Entrez Gene 187551 Entrez gene
SwissProt Q21688 EMBL-EBI
WormBase CE07408 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_505334 R03H4.5 [Caenorhabditis elegans] gb|AAC48106.1| Hypothetical protein R03H4.5 [Caenorhabditis elegans] 0.0
blast CAE72073 Hypothetical protein CBG19159 [Caenorhabditis briggsae] 0.0
blast CAB60446 Hypothetical protein Y67A10A.1 [Caenorhabditis elegans] ref|NP_502742.1| Y67A10A.1 [Caenorhabditis elegans] 0.0
blast NP_505334 R03H4.5 [Caenorhabditis elegans] gb|AAC48106.1| Hypothetical protein R03H4.5 [Caenorhabditis elegans] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.2E-40
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505334.1 10 5-27,32-54,67-89,134-156,168-190,227-249,256-273,286-308,315-334,344-363
R03H4.5 10 5-27,32-54,67-89,134-156,168-190,227-249,256-273,286-308,315-334,344-363
SNAP00000020053 4 31-53,60-79,89-111,118-137
GENEFINDER00000020056 10 5-27,32-54,67-89,134-156,168-190,227-249,256-273,286-308,315-334,344-363
Sequence
Target Sequence 
>C. ELEGANS:180640_AT
atggaacctatgtgagcagctggaaaatatctcaacaagctttagaaatatctaaaaagc
aagttgaatcacacaaaccagacgttctatttattattccaagatacatgcaaaacataa
aagatcctatcagagtgaatgacacaattgtccatgaaatgaacacaaatttggcgtact
acgagaaattcgtcagaaaaatatatattttggatgctcttccagaatacagtgaaaact
tcttcacactatttttacattacttggtcacaagacccgatgatatggagctcttacact
tgaacaagaaaaaagcagatcgggaaatgaggaatgtaagaaaacggttgagaatgataa
aatgtgaaaaatgccagatatttgatttgagccacctgtttgtggaaaacgataaatact
tgacttttgacagaaattcaatgctttcctacattgataattccgttcacttgacggatg
ctggagtgaagccatgtgaaccaatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAACCTATGTGAGCAGCTGGAA 681 51 1406 Antisense
GTTGAATCACACAAACCAGACGTTC 54 439 1468 Antisense
CCAGACGTTCTATTTATTATTCCAA 661 271 1483 Antisense
AACTTCTTCACACTATTTTTACATT 538 139 1642 Antisense
CATTACTTGGTCACAAGACCCGATG 116 213 1663 Antisense
AGACCCGATGATATGGAGCTCTTAC 265 71 1678 Antisense
ATTTGATTTGAGCCACCTGTTTGTG 654 15 1785 Antisense
GACAGAAATTCAATGCTTTCCTACA 269 369 1834 Antisense
GCTTTCCTACATTGATAATTCCGTT 272 303 1848 Antisense
AATTCCGTTCACTTGACGGATGCTG 241 175 1864 Antisense
GAGTGAAGCCATGTGAACCAATTTT 202 401 1889 Antisense
Sequence Source Affymetrix Proprietary Database