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[180639_at]

Description K10C9.7 /REP_DB=WormBase Gene ID /WP=CE18048 /TR=O61890 /GB=AAC17671.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 25.3
(-2.1)
A 		21.6
(-3)
A 		27.8
(-1.4)
A 		45.5
(3)
A 		24
B 9.7
(3)
A 		3.2
(-3)
A 		7.6
(1.1)
A 		5
(-1.3)
A 		7
C 4.5
(-2.8)
A 		40.9
(1.4)
A 		2.4
(-3)
A 		54.7
(3)
A 		52
avr 13.2
(-2.8) 		21.9
(-0.5) 		12.6
(-3) 		35.1
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 61.3
(-0.7)
A 		2.4
(-3)
A 		28.9
(-2)
A 		16.4
(-2.5)
A 		95.9
(0.6)
P 		158
(3)
P 		156
B 22.7
(-2.6)
A 		32.4
(-2)
A 		17.1
(-3)
A 		25.6
(-2.4)
A 		68.1
(0.4)
A 		106.2
(3)
P 		89
C 31.8
(-1.9)
A 		27.5
(-2.1)
A 		31.3
(-1.9)
A 		5.2
(-3)
A 		58.6
(-0.7)
P 		146.5
(3)
P 		141
avr 38.6
(-1.9) 		20.8
(-2.7) 		25.8
(-2.5) 		15.7
(-3) 		74.2
(-0.1) 		136.9
(3) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 9.2
(3)
A 		4.7
(-3)
A 		7.3
(0.5)
A 		6.7
(-0.3)
A 		5
B 3.1
(3)
A 		0.8
(-3)
A 		1.8
(-0.4)
A 		1.1
(-2.2)
A 		2
C 1.5
(-2.6)
A 		11.8
(3)
A 		0.8
(-3)
A 		9.2
(1.6)
A 		11
avr 4.6
(0.1) 		5.8
(3) 		3.3
(-3) 		5.7
(2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 11.3
(-1.3)
A 		0.9
(-3)
A 		6.3
(-2.1)
A 		4.1
(-2.5)
A 		28.9
(1.5)
P 		38.5
(3)
P 		38
B 7.9
(-2.4)
A 		10.8
(-1.9)
A 		4.2
(-3)
A 		6.8
(-2.6)
A 		27.7
(1)
A 		39.6
(3)
P 		35
C 11.8
(-1.7)
A 		8.4
(-2.1)
A 		8
(-2.1)
A 		1.1
(-3)
A 		19
(-0.8)
P 		49
(3)
P 		48
avr 10.3
(-2) 		6.7
(-2.6) 		6.2
(-2.7) 		4
(-3) 		25.2
(0.3) 		42.4
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180639_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14873
Sequence Type Exemplar sequence
Representative Public ID K10C9.7 NCBI
Target Description K10C9.7 /REP_DB=WormBase Gene ID /WP=CE18048 /TR=O61890 /GB=AAC17671.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070971(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070971 NCBI Caenorhabditis elegans K10C9.7 (K10C9.7) mRNA, complete cds. 11/11 None
SNAP00000001033 ENSEMBL cdna:SNAP chromosome:CEL140:V:1065527:1067236:-1 11/11 None
GENEFINDER00000001037 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1065527:1067371:-1 11/11 None
K10C9.7 ENSEMBL cdna:known chromosome:CEL140:V:1065527:1067503:-1 gene:K10C9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1065526-1067503(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10C9.7
Entrez Gene 187261 Entrez gene
SwissProt O61890 EMBL-EBI
WormBase CE18048 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503372 K10C9.7 [Caenorhabditis elegans] gb|AAC17671.1| Hypothetical protein K10C9.7 [Caenorhabditis elegans] 1.0E-140
blast NP_503372 K10C9.7 [Caenorhabditis elegans] gb|AAC17671.1| Hypothetical protein K10C9.7 [Caenorhabditis elegans] 1.0E-113
blast NP_503372 K10C9.7 [Caenorhabditis elegans] gb|AAC17671.1| Hypothetical protein K10C9.7 [Caenorhabditis elegans] 4.0E-98
blast CAA21011 Hypothetical protein Y39A1A.18 [Caenorhabditis elegans] ref|NP_499355.1| Y39A1A.18 [Caenorhabditis elegans] 1.0E-37
blast CAA21011 Hypothetical protein Y39A1A.18 [Caenorhabditis elegans] ref|NP_499355.1| Y39A1A.18 [Caenorhabditis elegans] 2.0E-37
blast CAE71035 Hypothetical protein CBG17876 [Caenorhabditis briggsae] 4.0E-29
blast CAE71035 Hypothetical protein CBG17876 [Caenorhabditis briggsae] 6.0E-29
Sequence
Target Sequence 
>C. ELEGANS:180639_AT
gaaagcttctcgagaccactttccccaataaagtgactccggggcagcgtgccaaagcac
gtgaaactctcaatttcattgctaacaacccggaaatctatgcaatcgcatctccgcagg
atccatcttcgaaggctaaaactgatccggtgtcccgtccccagctcaatataatcagtt
cgttctcttggccgatcacttccggctcggattggtctccacacggaagcgaattcaacg
atttgactgctccgagagttgggaaattgacaccggtcccccagtggtccgacatgaaaa
agtcgtcgttgaagcttggtaccgaggacaacttctccaaaatgtcatatgatccggcct
actcgaatactacccaatctcaatctgtcacaactctctacaatgagacatctaccccat
actat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGCTTCTCGAGACCACTTTCCC 595 359 353 Antisense
AATAAAGTGACTCCGGGGCAGCGTG 430 171 379 Antisense
AAATCTATGCAATCGCATCTCCGCA 599 117 446 Antisense
CCGTCCCCAGCTCAATATAATCAGT 436 265 507 Antisense
TATAATCAGTTCGTTCTCTTGGCCG 117 659 522 Antisense
GATTGGTCTCCACACGGAAGCGAAT 367 435 562 Antisense
TGGTACCGAGGACAACTTCTCCAAA 290 551 669 Antisense
AAATGTCATATGATCCGGCCTACTC 478 119 692 Antisense
GAATACTACCCAATCTCAATCTGTC 375 327 717 Antisense
CAATCTGTCACAACTCTCTACAATG 545 181 733 Antisense
CAATGAGACATCTACCCCATACTAT 354 183 753 Antisense
Sequence Source Affymetrix Proprietary Database