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[180638_at]

Description Y9C9A.3 /REP_DB=WormBase Gene ID /WP=CE25653 /TR=Q9N2S7 /GB=AAF60928.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 11      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 17.5
(-3)
M 		26.2
(-2.2)
A 		23.9
(-2.4)
A 		84.4
(3)
A 		67
B 43.8
(-3)
A 		51.5
(-0.6)
A 		58.4
(1.6)
A 		62.9
(3)
P 		19
C 67.9
(-0)
P 		65.5
(-0.2)
A 		23.3
(-3)
A 		112.9
(3)
P 		90
avr 43.1
(-2.1) 		47.7
(-1.5) 		35.2
(-3) 		86.7
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 35.3
(0.2)
M 		8.5
(-2.6)
A 		63.1
(3)
P 		4.5
(-3)
A 		5.9
(-2.9)
A 		11.4
(-2.3)
A 		59
B 47.2
(1.8)
A 		26.6
(-0.6)
A 		5.9
(-3)
A 		57.6
(3)
A 		24.4
(-0.9)
A 		28.8
(-0.3)
A 		52
C 44.2
(1.7)
P 		41.3
(1.3)
P 		55.2
(3)
A 		4.8
(-3)
A 		20.7
(-1.1)
A 		15.6
(-1.7)
A 		50
avr 42.2
(3) 		25.5
(-1) 		41.4
(2.8) 		22.3
(-1.7) 		17
(-3) 		18.6
(-2.6) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 6.4
(-2.4)
M 		5.7
(-3)
A 		6.2
(-2.6)
A 		12.4
(3)
A 		7
B 14
(3)
A 		12.7
(-3)
A 		13.5
(0.7)
A 		13.4
(0.2)
P 		1
C 22.5
(3)
P 		18.8
(1.5)
A 		8.1
(-3)
A 		19
(1.5)
P 		14
avr 14.3
(2.4) 		12.4
(0.3) 		9.3
(-3) 		14.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.5
(-0.4)
M 		3
(-2.1)
A 		13.7
(3)
P 		1.1
(-3)
A 		1.8
(-2.7)
A 		2.8
(-2.2)
A 		13
B 16.4
(3)
A 		8.9
(0)
A 		1.4
(-3)
A 		15.3
(2.6)
A 		9.9
(0.4)
A 		10.7
(0.7)
A 		15
C 16.4
(3)
P 		12.6
(1.5)
P 		14.1
(2.1)
A 		1
(-3)
A 		6.7
(-0.8)
A 		5.2
(-1.4)
A 		15
avr 13.1
(3) 		8.2
(-1) 		9.7
(0.2) 		5.8
(-3) 		6.1
(-2.8) 		6.2
(-2.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180638_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11062
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.3 NCBI
Target Description Y9C9A.3 /REP_DB=WormBase Gene ID /WP=CE25653 /TR=Q9N2S7 /GB=AAF60928.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068281
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y9C9A.3 ENSEMBL cdna:known chromosome:CEL140:IV:4954177:4957478:1 gene:Y9C9A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068281 6/11 Cross Hyb Matching Probes None
SNAP00000021397 6/11 Cross Hyb Matching Probes None
GENEFINDER00000021410 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4954182-4957484(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y9C9A.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500682 Seven TM Receptor family member (str-163) [Caenorhabditis elegans] gb|AAF60928.2| Seven tm receptor protein 163 [Caenorhabditis elegans] 0.0
blast CAE66374 Hypothetical protein CBG11634 [Caenorhabditis briggsae] 1.0E-152
blast CAE66373 Hypothetical protein CBG11633 [Caenorhabditis briggsae] 9.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.4E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
Y9C9A.3 7 15-34,47-69,94-116,136-158,203-225,255-277,292-314
Sequence
Target Sequence 
>C. ELEGANS:180638_AT
tcgctctgctcggaatggctattttattcagtattatgggagtctctctttccattcttg
cgtattttgcaacaaaatgctacactcgaatcaaaaaactaatatacgagggtgaatctt
catataccagaaacctacaaaaacagctttacaaggctcttgttgctcaagcttccatcc
caatgttctttattttcacaccaattggattgtatttaacacttccacttgttggaattg
aattggaaattagtggagaaattgcaacatttgtgtatgcattgtatccggcactcgacc
cgttacccattatatttatcattcataattatcgcgatgcagtgttgggtcagttttcta
aaaaattttatcgtaattttgtgaaattttcaattaaaagcagtgttgcaaaccttaact
cgttggaatttgaccatacaaaaattgccaactgccaatacatttataatttttacacaa
cctttcataatgaggagcagaggtgcaataatattaaaggttttacggaatttttcgatc
ttcaatctccttcatttttactgaaagtggtctcaacttccacatacatatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTCTGCTCGGAATGGCTATTTT 522 597 620 Antisense
ATTATGGGAGTCTCTCTTTCCATTC 339 13 652 Antisense
CTCTTTCCATTCTTGCGTATTTTGC 118 231 665 Antisense
TCCATCCCAATGTTCTTTATTTTCA 235 591 793 Antisense
GTGTATGCATTGTATCCGGCACTCG 386 485 892 Antisense
GACCCGTTACCCATTATATTTATCA 600 377 916 Antisense
ATCGCGATGCAGTGTTGGGTCAGTT 537 33 950 Antisense
GCAGTGTTGCAAACCTTAACTCGTT 602 309 1019 Antisense
TTATAATTTTTACACAACCTTTCAT 681 613 1083 Antisense
AATTTTTCGATCTTCAATCTCCTTC 514 175 1148 Antisense
GTCTCAACTTCCACATACATATTTT 680 469 1189 Antisense
Sequence Source Affymetrix Proprietary Database