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[180637_at]

Description F32D1.9 /REP_DB=WormBase Gene ID /WP=CE09873 /TR=O16293 /GB=AAB65355.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 48      4grp_high_8_8 > 52      6grp_highest_nonorm > 81      6grp_total > 38      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 304.8
(-0.8)
P 		343.1
(1.9)
P 		358.2
(3)
P 		274.3
(-3)
P 		84
B 386.9
(2)
P 		376.8
(1.6)
P 		411.7
(3)
P 		259.5
(-3)
P 		152
C 358.6
(3)
P 		341.8
(1.3)
M 		313
(-1.6)
P 		298.8
(-3)
P 		60
avr 350.1
(2.2) 		353.9
(2.5) 		361
(3) 		277.5
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 280
(1.1)
P 		307.7
(1.9)
P 		150.8
(-3)
P 		240.2
(-0.2)
P 		206
(-1.3)
P 		341.9
(3)
P 		191
B 241.3
(-0)
P 		242.8
(0.1)
P 		251.6
(0.5)
P 		177
(-3)
P 		227.6
(-0.6)
P 		306.1
(3)
P 		129
C 397.9
(3)
P 		281
(0)
P 		227.6
(-1.3)
P 		162.4
(-3)
P 		256.3
(-0.6)
P 		243.8
(-0.9)
P 		236
avr 306.4
(3) 		277.2
(1.5) 		210
(-2.1) 		193.2
(-3) 		230
(-1) 		297.3
(2.5) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 111
(3)
P 		74.5
(-0.1)
P 		93.6
(1.5)
P 		40.1
(-3)
P 		71
B 123.4
(3)
P 		93.1
(0.3)
P 		95.4
(0.5)
P 		55.3
(-3)
P 		68
C 118.7
(3)
P 		98.3
(1.2)
M 		109.1
(2.2)
P 		50.4
(-3)
P 		68
avr 117.7
(3) 		88.6
(0.5) 		99.4
(1.4) 		48.6
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 51.6
(-1.5)
P 		109.4
(3)
P 		32.8
(-3)
P 		60.9
(-0.8)
P 		62.2
(-0.7)
P 		83.2
(0.9)
P 		77
B 83.9
(0.3)
P 		80.8
(0)
P 		61.1
(-1.7)
P 		46.9
(-3)
P 		92.5
(1.1)
P 		114.2
(3)
P 		67
C 147.5
(3)
P 		85.8
(-0.2)
P 		57.9
(-1.7)
P 		32.7
(-3)
P 		82.9
(-0.4)
P 		81.6
(-0.4)
P 		115
avr 94.3
(3) 		92
(2.7) 		50.6
(-2.5) 		46.8
(-3) 		79.2
(1.1) 		93
(2.8) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180637_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14865
Sequence Type Exemplar sequence
Representative Public ID F32D1.9 NCBI
Target Description F32D1.9 /REP_DB=WormBase Gene ID /WP=CE09873 /TR=O16293 /GB=AAB65355.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071802 NCBI Caenorhabditis elegans F32D1.9 (F32D1.9) mRNA, complete cds. 11/11 None
SNAP00000007318 ENSEMBL cdna:SNAP chromosome:CEL140:V:4371717:4373466:1 11/11 None
GENEFINDER00000007338 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4372786:4373466:1 11/11 None
F32D1.9.2 ENSEMBL cdna:known chromosome:CEL140:V:4371256:4373993:1 gene:F32D1.9 11/11 None
F32D1.9.1 ENSEMBL cdna:known chromosome:CEL140:V:4371256:4373621:1 gene:F32D1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4371716-4373466(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32D1.9
Entrez Gene 178835 Entrez gene
SwissProt O16293 EMBL-EBI
WormBase CE09873 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585805_AT similar to FIP1-like 1 cfa
CANINE_2:CFA.11006.1.A1_AT similar to FIP1-like 1 cfa
CANINE_2:CFA.19896.1.S1_AT similar to FIP1-like 1 cfa
CANINE_2:CFAAFFX.3971.1.S1_AT similar to FIP1-like 1 cfa
CHICKEN:GGAAFFX.12153.1.S1_AT FIP1 like 1 (S. cerevisiae) gga
CHICKEN:GGAAFFX.24313.1.S1_AT FIP1 like 1 (S. cerevisiae) gga
HG-U133_PLUS_2:221007_S_AT FIP1 like 1 (S. cerevisiae) hs
HG-U133A:221007_S_AT FIP1 like 1 (S. cerevisiae) hs
HG-U133A_2:221007_S_AT FIP1 like 1 (S. cerevisiae) hs
HU35KSUBC:RC_AA609942_AT FIP1 like 1 (S. cerevisiae) hs
HU35KSUBD:RC_H82424_AT FIP1 like 1 (S. cerevisiae) hs
U133_X3P:G13569873_3P_S_AT FIP1 like 1 (S. cerevisiae) hs
U133_X3P:HS2.334812.2.S1_3P_S_AT FIP1 like 1 (S. cerevisiae) hs
HG-U133_PLUS_2:1554424_AT FIP1 like 1 (S. cerevisiae) hs
HG-U95B:43072_S_AT FIP1 like 1 (S. cerevisiae) hs
HG-U95B:58459_S_AT FIP1 like 1 (S. cerevisiae) hs
HG-U95D:69587_AT FIP1 like 1 (S. cerevisiae) hs
HG-U133_PLUS_2:233282_AT FIP1 like 1 (S. cerevisiae) hs
HG-U133B:233282_AT FIP1 like 1 (S. cerevisiae) hs
HG-U95B:42679_AT FIP1 like 1 (S. cerevisiae) hs
HG-U95D:82493_AT FIP1 like 1 (S. cerevisiae) hs
HU35KSUBC:RC_T79169_AT FIP1 like 1 (S. cerevisiae) hs
MOE430A:1421222_AT FIP1 like 1 (S. cerevisiae) mm
MOUSE430_2:1421222_AT FIP1 like 1 (S. cerevisiae) mm
MOUSE430A_2:1421222_AT FIP1 like 1 (S. cerevisiae) mm
MG-U74AV2:104600_AT FIP1 like 1 (S. cerevisiae) mm
MU11KSUBA:AA606595_AT FIP1 like 1 (S. cerevisiae) mm
MU11KSUBA:AA198591_S_AT FIP1 like 1 (S. cerevisiae) mm
MOE430A:1428280_AT FIP1 like 1 (S. cerevisiae) mm
MOUSE430A_2:1428280_AT FIP1 like 1 (S. cerevisiae) mm
MOUSE430_2:1428280_AT FIP1 like 1 (S. cerevisiae) mm
MOE430A:1452720_A_AT FIP1 like 1 (S. cerevisiae) mm
MOUSE430A_2:1452720_A_AT FIP1 like 1 (S. cerevisiae) mm
MOUSE430_2:1452720_A_AT FIP1 like 1 (S. cerevisiae) mm
MOE430B:1443586_AT FIP1 like 1 (S. cerevisiae), mRNA (cDNA clone MGC:7777 IMAGE:3499130) mm
MOUSE430_2:1443586_AT FIP1 like 1 (S. cerevisiae), mRNA (cDNA clone MGC:7777 IMAGE:3499130) mm
MU19KSUBA:TC16062_AT FIP1 like 1 (S. cerevisiae), mRNA (cDNA clone MGC:7777 IMAGE:3499130) mm
MU19KSUBC:TC41932_AT FIP1 like 1 (S. cerevisiae), mRNA (cDNA clone MGC:7777 IMAGE:3499130) mm
MU19KSUBC:TC41932_G_AT FIP1 like 1 (S. cerevisiae), mRNA (cDNA clone MGC:7777 IMAGE:3499130) mm
RAE230A:1389621_AT FIP1 like 1 (S. cerevisiae) (predicted) rn
RAT230_2:1389621_AT FIP1 like 1 (S. cerevisiae) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAB65355 Hypothetical protein F32D1.9 [Caenorhabditis elegans] ref|NP_504203.1| F32D1.9 [Caenorhabditis elegans] 1.0E-137
blast CAE56054 Hypothetical protein CBG23626 [Caenorhabditis briggsae] 2.0E-83
blast AAF52120 CG1078-PA [Drosophila melanogaster] ref|NP_649476.1| CG1078-PA [Drosophila melanogaster] 3.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR007854 EMBL-EBI Fip1 1.4E-39
Sequence
Target Sequence 
>C. ELEGANS:180637_AT
ggaggtctcgatctcaatcttggtctaccgccacttggattcaacccaaatatgcctcca
cctggaatgcctccgatgggcatgatgtcaacgagcctgccaccgcccggtttcgcgatg
ccgcctccacaatttcagcaacactcgagagctggcttcggacctggaccagttggcgct
gcttcagctccgcgaagtctcatgggatctggtgcattttcgacggttagtgatgacgat
gaggagagaagaagctcccgacggaagcgatcccgatcaaggagcccacatagagataga
gacagggacaggagagatcgagagacgagacgccgtggagaacgagaatcggatcgcacg
tcttccagaagacatagaagccgaagtgcgtctggagatcggcgcagaaagcgagatgat
cgggaacgagagaaacggagagaacggcgtggagatgatgaagatcggaagaagagaagt
cgtcgtggtgatgaggaagaggagagcagcagcggtcggaaagagagaaaagagaagagc
tccagatctcgacacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGTCTCGATCTCAATCTTGGTC 198 515 940 Antisense
GGATTCAACCCAAATATGCCTCCAC 243 509 976 Antisense
GGCATGATGTCAACGAGCCTGCCAC 37 537 1018 Antisense
CCTCCACAATTTCAGCAACACTCGA 61 267 1063 Antisense
CAACACTCGAGAGCTGGCTTCGGAC 66 189 1078 Antisense
AGCTCCGCGAAGTCTCATGGGATCT 76 81 1125 Antisense
GATCTGGTGCATTTTCGACGGTTAG 682 417 1145 Antisense
AAGAAGCTCCCGACGGAAGCGATCC 166 153 1188 Antisense
GGAAGCGATCCCGATCAAGGAGCCC 431 529 1202 Antisense
AACGAGAATCGGATCGCACGTCTTC 99 145 1280 Antisense
GAGAAGAGCTCCAGATCTCGACACG 26 393 1471 Antisense
Sequence Source Affymetrix Proprietary Database