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[180635_at]

Description F36D4.1 /REP_DB=WormBase Gene ID /WP=CE07189 /TR=Q20102 /GB=AAA93488.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 04      6grp_total > 99      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 49
(-3)
A 		71.1
(-1.8)
A 		68.2
(-2)
P 		161.9
(3)
P 		113
B 82.9
(3)
M 		73.4
(-0.4)
A 		71.4
(-1.2)
A 		66.3
(-3)
P 		17
C 81.3
(0.4)
P 		59.8
(-1.2)
P 		35.7
(-3)
A 		115.8
(3)
A 		80
avr 71.1
(-1.6) 		68.1
(-2) 		58.4
(-3) 		114.7
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 83.3
(1.7)
A 		17.3
(-3)
A 		20.4
(-2.8)
A 		61.9
(0.1)
A 		102.4
(3)
P 		82.3
(1.6)
P 		85
B 56.8
(1.1)
A 		49.7
(0.6)
A 		3.1
(-3)
A 		22.1
(-1.5)
A 		79.5
(2.9)
P 		81.1
(3)
P 		78
C 42.1
(-2.4)
A 		76.5
(0.6)
A 		55.7
(-1.2)
A 		35.2
(-3)
A 		96.8
(2.4)
P 		103.7
(3)
A 		69
avr 60.7
(0.1) 		47.8
(-1.1) 		26.4
(-3) 		39.7
(-1.8) 		92.9
(3) 		89
(2.6) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 17.8
(-1.3)
A 		15.4
(-3)
A 		17.8
(-1.3)
P 		23.7
(3)
P 		8
B 26.4
(3)
M 		18.1
(-1)
A 		16.5
(-1.8)
A 		14.1
(-3)
P 		12
C 26.9
(3)
P 		17.2
(-1)
P 		12.4
(-3)
A 		19.5
(-0.1)
A 		15
avr 23.7
(3) 		16.9
(-2) 		15.6
(-3) 		19.1
(-0.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 15.4
(-0.5)
A 		6.2
(-2.6)
A 		4.4
(-3)
A 		15.7
(-0.4)
A 		30.9
(3)
P 		20
(0.5)
P 		27
B 19.8
(0.6)
A 		16.6
(0)
A 		0.8
(-3)
A 		5.8
(-2)
A 		32.3
(3)
P 		30.3
(2.6)
P 		32
C 15.6
(-1.2)
A 		23.3
(0.5)
A 		14.2
(-1.5)
A 		7.1
(-3)
A 		31.3
(2.3)
P 		34.7
(3)
A 		28
avr 16.9
(-0.5) 		15.4
(-0.9) 		6.5
(-3) 		9.5
(-2.3) 		31.5
(3) 		28.3
(2.2) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180635_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11490
Sequence Type Exemplar sequence
Representative Public ID F36D4.1 NCBI
Target Description F36D4.1 /REP_DB=WormBase Gene ID /WP=CE07189 /TR=Q20102 /GB=AAA93488.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073036(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073036 NCBI Caenorhabditis elegans F36D4.1 (F36D4.1) mRNA, complete cds. 9/11 None
SNAP00000027392 ENSEMBL cdna:SNAP chromosome:CEL140:V:9420423:9421840:1 11/11 None
GENEFINDER00000027401 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9420423:9421840:1 11/11 None
F36D4.1 ENSEMBL cdna:known chromosome:CEL140:V:9420423:9421840:1 gene:F36D4.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9420422-9421840(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36D4.1
Entrez Gene 179323 Entrez gene
SwissProt Q20102 EMBL-EBI
WormBase CE33072 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93488 Hypothetical protein F36D4.1 [Caenorhabditis elegans] ref|NP_505437.2| F36D4.1 [Caenorhabditis elegans] 2.0E-68
blast AAA93488 Hypothetical protein F36D4.1 [Caenorhabditis elegans] ref|NP_505437.2| F36D4.1 [Caenorhabditis elegans] 2.0E-62
blast CAE72304 Hypothetical protein CBG19434 [Caenorhabditis briggsae] 1.0E-28
blast CAE72170 Hypothetical protein CBG19274 [Caenorhabditis briggsae] 1.0E-27
blast CAE72304 Hypothetical protein CBG19434 [Caenorhabditis briggsae] 8.0E-25
Sequence
Target Sequence 
>C. ELEGANS:180635_AT
atgtctaattcatcagctcattcctcattcggtacatcaaatgactcgttttcttcagtc
caaagtgtgattctgccaccagttggaccatttggtcagaaaaagagaacgtttgagtac
attggtgtcacacttgttgtcgataagttgaaattggctgaatggatgaacgggatcggg
aaattgtttggatccgcagagctccgtgataatgttaccaatcttcatatgcaattggtc
ccggtttcccatctatcaagtgaaaaaacgaaaaaagagatcatgacactgattgaagaa
tacaaaacacttgtcgttgtttgtgagaatatgctggacagaatggaaaaatcggctgac
ttccacagtacggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTAATTCATCAGCTCATTCCT 225 49 13 Antisense
CTCATTCCTCATTCGGTACATCAAA 22 231 29 Antisense
AAATGACTCGTTTTCTTCAGTCCAA 52 119 51 Antisense
GTCCAAAGTGTGATTCTGCCACCAG 87 477 70 Antisense
TTCTGCCACCAGTTGGACCATTTGG 673 691 83 Antisense
GAGAACGTTTGAGTACATTGGTGTC 66 393 117 Antisense
TTGGTGTCACACTTGTTGTCGATAA 557 707 134 Antisense
GCAGAGCTCCGTGATAATGTTACCA 704 311 208 Antisense
TCATATGCAATTGGTCCCGGTTTCC 569 611 237 Antisense
CCGGTTTCCCATCTATCAAGTGAAA 384 265 253 Antisense
ATCGGCTGACTTCCACAGTACGGAT 11 35 363 Antisense
Sequence Source Affymetrix Proprietary Database