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[180634_at]

Description F21A10.4 /REP_DB=WormBase Gene ID /WP=CE18626 /TR=Q9XXN6 /GB=CAA16509.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 54      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 142.9
(3)
A 		75.5
(-1.2)
A 		86.5
(-0.5)
A 		47.2
(-3)
A 		96
B 123.2
(3)
A 		73.5
(0.2)
A 		16.3
(-3)
A 		40
(-1.7)
A 		107
C 109.4
(3)
A 		96.2
(1.9)
A 		87.1
(1.1)
A 		38.2
(-3)
A 		71
avr 125.2
(3) 		81.7
(-0.1) 		63.3
(-1.5) 		41.8
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 82
(-3)
A 		104.2
(-1.1)
A 		83
(-2.9)
A 		117.9
(0.1)
A 		150.5
(3)
A 		146
(2.6)
A 		69
B 186.9
(3)
A 		146.2
(0.5)
A 		134
(-0.2)
A 		142.1
(0.3)
A 		131.9
(-0.3)
A 		88.1
(-3)
A 		99
C 110.4
(-0.6)
A 		155.6
(3)
A 		79.3
(-3)
A 		105.5
(-0.9)
A 		98.4
(-1.5)
A 		143.7
(2.1)
A 		76
avr 126.4
(1.5) 		135.3
(3) 		98.8
(-3) 		121.8
(0.8) 		126.9
(1.6) 		125.9
(1.5) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 52
(3)
A 		16.4
(-1.7)
A 		22.6
(-0.9)
A 		6.9
(-3)
A 		45
B 39.3
(3)
A 		18.2
(-0.6)
A 		3.8
(-3)
A 		8.5
(-2.2)
A 		36
C 36.2
(3)
A 		27.7
(1.3)
A 		30.4
(1.8)
A 		6.4
(-3)
A 		30
avr 42.5
(3) 		20.8
(-0.7) 		18.9
(-1) 		7.3
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 15.1
(-3)
A 		37.1
(1.4)
A 		18.1
(-2.4)
A 		29.9
(-0.1)
A 		45.4
(3)
A 		35.5
(1)
A 		30
B 65
(3)
A 		48.7
(-0)
A 		32.6
(-3)
A 		37.6
(-2.1)
A 		53.6
(0.9)
A 		32.9
(-2.9)
A 		32
C 40.9
(1.5)
A 		47.5
(2.9)
A 		20.2
(-3)
A 		21.2
(-2.8)
A 		31.8
(-0.5)
A 		48.1
(3)
A 		28
avr 40.3
(1.8) 		44.4
(3) 		23.6
(-3) 		29.6
(-1.3) 		43.6
(2.8) 		38.8
(1.4) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180634_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16204
Sequence Type Exemplar sequence
Representative Public ID F21A10.4 NCBI
Target Description F21A10.4 /REP_DB=WormBase Gene ID /WP=CE18626 /TR=Q9XXN6 /GB=CAA16509.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077309(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077309 NCBI Caenorhabditis elegans F21A10.4 (F21A10.4) mRNA, complete cds. 11/11 None
SNAP00000008357 ENSEMBL cdna:SNAP chromosome:CEL140:X:10183951:10186137:1 11/11 None
GENEFINDER00000008360 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10183951:10186137:1 11/11 None
F21A10.4 ENSEMBL cdna:known chromosome:CEL140:X:10183951:10186156:1 gene:F21A10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10183950-10186137(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21A10.4
Entrez Gene 184759 Entrez gene
SwissProt Q9XXN6 EMBL-EBI
WormBase CE36482 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16509 Hypothetical protein F21A10.4 [Caenorhabditis elegans] ref|NP_509710.2| F21A10.4 [Caenorhabditis elegans] 0.0
blast CAE70538 Hypothetical protein CBG17174 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180634_AT
gcttctcgttgaccgttttattgacacgtgggctaaggaagcgtacaagccaccctacac
agaagagtatggagcaaccaaaattcatctatctcagcgatgcttcaagcgtggaaagca
tgtaatagttgctttgcagggcagcgagccccgttacgtcaagggcacactggtgcagaa
gaaaagactacgcgtgcctaatgtgaaacttgatgaaagctattgcagtcaacgaaacgt
acgaattttcgaagaaaatattcataggaaagatcatatccatgttatgcacatcccgtt
caatattccaccaagcattgaaatctgttactggaacgtcctccaaatcgaatatcacta
tgaagtcgaaataacattagaaggtggccacactcataatcattcaattcctatttggat
aggatgcacagaagataatctctcagtgccagctcaacaagaggaggtaatacccaaaca
ttcactgatcgtggatgagccatttgaagagcttcccgagtttgaagtagtgcttgaaga
tgatatacatgagcacccctattgggtcgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTCTCGTTGACCGTTTTATTGAC 691 303 1380 Antisense
TAAGGAAGCGTACAAGCCACCCTAC 212 513 1413 Antisense
TAGTTGCTTTGCAGGGCAGCGAGCC 529 653 1505 Antisense
GAGCCCCGTTACGTCAAGGGCACAC 632 383 1525 Antisense
GTTATGCACATCCCGTTCAATATTC 548 447 1663 Antisense
GAAATCTGTTACTGGAACGTCCTCC 707 361 1699 Antisense
GAACGTCCTCCAAATCGAATATCAC 600 347 1713 Antisense
GGTGGCCACACTCATAATCATTCAA 136 499 1762 Antisense
TAATCTCTCAGTGCCAGCTCAACAA 390 635 1815 Antisense
AATACCCAAACATTCACTGATCGTG 592 171 1848 Antisense
CATGAGCACCCCTATTGGGTCGAGC 638 209 1927 Antisense
Sequence Source Affymetrix Proprietary Database