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[180632_at]

Description F46H5.1 /REP_DB=WormBase Gene ID /WP=CE04587 /TR=Q20491 /GB=AAB37020.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 35      4grp_highest_8_8 > 58      4grp_high_8_8 > 32      6grp_highest_nonorm > 61      6grp_total > 35      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > 02      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 633
1 2 3 4 range
A 955.5
(3)
P 		460.2
(-1.7)
P 		353.7
(-2.7)
P 		322.5
(-3)
P 		633
B 847.6
(3)
P 		460.3
(-1.9)
P 		375.3
(-3)
P 		464.6
(-1.9)
P 		472
C 938.6
(3)
P 		396.9
(-3)
P 		432.3
(-2.6)
P 		458.5
(-2.3)
P 		542
avr 913.9
(3) 		439.1
(-2.4) 		387.1
(-3) 		415.2
(-2.7) 		527

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 440.4
(-1.1)
P 		588.3
(3)
P 		417.4
(-1.7)
P 		443.5
(-1)
P 		371.1
(-3)
P 		467.9
(-0.3)
P 		217
B 527.1
(3)
P 		492.1
(1.2)
P 		523.2
(2.8)
P 		452.1
(-0.9)
P 		411.2
(-3)
P 		446
(-1.2)
P 		116
C 603
(3)
P 		562.4
(2)
P 		573.3
(2.3)
P 		458.2
(-0.5)
P 		354
(-3)
P 		449.9
(-0.7)
P 		249
avr 523.5
(2.1) 		547.6
(3) 		504.6
(1.5) 		451.3
(-0.4) 		378.8
(-3) 		454.6
(-0.3) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 301
1 2 3 4 range
A 347.9
(3)
P 		99.9
(-1.9)
P 		92.5
(-2.1)
P 		47.2
(-3)
P 		301
B 270.3
(3)
P 		113.7
(-2.1)
P 		87
(-3)
P 		99
(-2.6)
P 		183
C 310.7
(3)
P 		114.1
(-2.1)
P 		150.7
(-1.1)
P 		77.3
(-3)
P 		233
avr 309.6
(3) 		109.2
(-2.1) 		110.1
(-2.1) 		74.5
(-3) 		235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 81.2
(-3)
P 		209.2
(3)
P 		90.9
(-2.5)
P 		112.5
(-1.5)
P 		112
(-1.6)
P 		113.9
(-1.5)
P 		128
B 183.4
(3)
P 		163.8
(1.2)
P 		127.1
(-2.3)
P 		119.7
(-3)
P 		167.1
(1.5)
P 		166.3
(1.4)
P 		64
C 223.5
(3)
P 		171.6
(0.6)
P 		145.9
(-0.5)
P 		92.1
(-3)
P 		114.5
(-2)
P 		150.6
(-0.3)
P 		131
avr 162.7
(1.5) 		181.5
(3) 		121.3
(-1.9) 		108.1
(-3) 		131.2
(-1.1) 		143.6
(-0.1) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180632_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17256
Sequence Type Exemplar sequence
Representative Public ID F46H5.1 NCBI
Target Description F46H5.1 /REP_DB=WormBase Gene ID /WP=CE04587 /TR=Q20491 /GB=AAB37020.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029503(11), NM_001029504(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029503 NCBI Caenorhabditis elegans F46H5.2a (F46H5.2) mRNA, complete cds. 11/11 None
NM_001029504 NCBI Caenorhabditis elegans F46H5.2b (F46H5.2) mRNA, complete cds. 11/11 None
SNAP00000013757 ENSEMBL cdna:SNAP chromosome:CEL140:X:7265611:7267354:1 11/11 None
GENEFINDER00000013760 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7265611:7267354:1 11/11 None
F46H5.2a ENSEMBL cdna:known chromosome:CEL140:X:7265611:7267831:1 gene:F46H5.2 11/11 A 
F46H5.2b ENSEMBL cdna:known chromosome:CEL140:X:7265928:7267354:1 gene:F46H5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029505 7/11 Cross Hyb Matching Probes None
F46H5.2c 7/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180989 3 2 NM_001029503 174193_at (11), 180632_at (11), 180675_at (10)
NM_001029504 180632_at (11)
NM_001029505 174193_at (11), 180675_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7266537-7267353(+) 100.0 100.0
Public Domain and Genome References
Ensembl F46H5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37021 Hypothetical protein F46H5.2a [Caenorhabditis elegans] ref|NP_001024674.1| F46H5.2a [Caenorhabditis elegans] 0.0
blast AAP40530 Hypothetical protein F46H5.2b [Caenorhabditis elegans] ref|NP_001024675.1| F46H5.2b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180632_AT
atctcatacagtccaagcccaagagaaagtccagcacaaagtccaacaagacacgctcac
aagcttaagtttcagagagcagaatctcctatatgtcgtcaaccaatcaagcgtaaacta
actgttaccacattggcagagactgatatcaagaggctgtttgtgccaagaagcaacact
tctccattggtaactgataaaacatttccgtatccacaaaatgtcggccaattgtttgaa
tctgcatcgaccagcagtgaattttcatccttttccgttccacacagtccaggaccgctt
cgcgcaatgaccccattgagcagtgtgtctgttggcgatcaagaggagaactcgccaagt
gtcaaggatgccgaagagaaaacaactgataatgacgaagagatgcaggatgtggagatg
tctgataatggaactgaagtcgacgatgacttgattcgtgctgcaacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCATACAGTCCAAGCCCAAGAG 211 31 28 Antisense
GAAAGTCCAGCACAAAGTCCAACAA 327 361 52 Antisense
AGTCCAACAAGACACGCTCACAAGC 151 59 67 Antisense
GAATCTCCTATATGTCGTCAACCAA 71 329 109 Antisense
GAAGCAACACTTCTCCATTGGTAAC 684 339 197 Antisense
CGGCCAATTGTTTGAATCTGCATCG 667 241 252 Antisense
GCATCGACCAGCAGTGAATTTTCAT 705 309 271 Antisense
CTTCGCGCAATGACCCCATTGAGCA 28 221 325 Antisense
GAGCAGTGTGTCTGTTGGCGATCAA 438 389 345 Antisense
GAGGAGAACTCGCCAAGTGTCAAGG 227 403 370 Antisense
GATGACTTGATTCGTGCTGCAACAG 139 413 472 Antisense
Sequence Source Affymetrix Proprietary Database